Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2706g00014 ATGGAGGATGGGAGTGTTAGGGTTTCAGGGGCAATTGAGGATGACTCAGTAGTAACCCGCTCCTCTCCCTCCTACTGGCTGGACGCTTGTGAGGACATTTCCTGCGATCTCATTCACTTCGATGATGGGTCCATAGTCTCAGAACAGGTCGATAACAATTTGATACAGGATGGACTGGTTAACGATTTCTTCGGCGGCATTGATAGCATTCTTGACAGTATTAAGAACGGTAGTGGCCTCCCTGTGGCCACTGAGACTGGAAATGGAAGCCAAGACTTTGCGTTGGCACTGCAAGCCGAAATCCCAGATCAGAAAGATAATATTGCGAAGAATGGGTTGGCTGGTGAAAAACATGGTCGTGCTGTTGAGGTATGTGAGCGTTCAGAAGCTGAAACTAATGGGTATAAAGTATCTAATGGCAACGAAGAAGGGAGAACTTTGGGTGATTCTAAGGAAAATGGAGTTTGTGATCTATCTAGGGAGCATCACGTGGATGTTGAGGAAAGATTTGGCAAGAGGGCTCGGCTTGGCAGTTATAAGAATGAGAGACTTTATCCTGGCAGAGGGAATTACCACCCCAAGGAGAGGGAGAGGTGTCCTAATAGAAAGAGGCCCCGGGAGTGGGATGAGGGTGATAGAAAGGAAAAAGATAGCGTGAGGAGAAGAGAAAATTTTAATGGTTGTGGTAGGAGAGATGTTAGGGATCGGGATTGGAGGGATAGAGAACGGGGTTACTGGGAGAGGGACAAGTCAGGTTCCAATGAATTGGTCTTTCGCATAGGCACTTGGGAAGCTGATCGATATCGAGAAGGTAAGGTTGCTAATGACACCAAACAAGAATGCAATGGAAAGATTGAGATTAAAACTGAGGAGCCAAAGGAGAGAGTTCCTGAGGAAAAAGCTAGAAAGTACCAGTTAGATGTTCTTGAGCAGGCAAAGCAGAGAAATACTATAGCTTTTCTTGAAACTGGGGCTGGGAAGACCCTCATTGCTGTTCTTCTCATTAAAAGTATTCATGAGAGTTTACAAAAGCAGAATAAAAAAATGCTTGCGGTATTTTTAGTTCCCAAAGTACCACTTGTTTATCAGCAAGCAGAAGTAATTCGGGAACGAACTGGCTACCATGTGGGTCATTACTGTGGAGAAATGGGACAGGACTTCTGGGATGCTCGAAGGTGGCAACGTGAATTTGAAACAAAACAGGTTCTAGTCATGACGGCTCAAATTCTTTTGAACATTCTGAGGCACAGCATAATAAAAATGGAAACAATCAACCTCCTGATTCTGGATGAGTGCCATCATGCTGTGAAGAAACATCCGTATTCACTGGTGATGTCTGAGTTCTATCATACGACACCCAAAGAGAAGAGACCATCTGTTTTTGGAATGACTGCTTCCCCTGTTAATTTGAAAGGTGTATCCAGCCAAGTGGATTGTGCAATAAAAATTCGGAATCTTGAAAGTAAGCTAGATTCTGTAGTTTGTACCATTAAAGACCGTAAGGAGCTGGAGAAGCATGTACCAATGCCTTCTGAAGTTGTGGTGGAGTATGACAAGGCAGCCAGTTTGTGTTATCTTCATGAGCAGATAAAGCAAATGGAAGTTGAAGTTGAAGAAGCTGCAAAGTCAAGTTCAAGAAGAAGTAAATGGCAGTTCATGGGAGCTAGAGATGCAGGAGCCAAGGAGGAGCTCCGTCAAGTATATGGTGTTTCTGAAAGAACAGAAAGTGATGGAGCTGCGAACCTAATTCAGAAGTTGAGAGCTATCAATTATGCACTTGGCGAACTGGGTCAGTGGTGTGCTTACAAGGTTGCACATTCTTTCCTATCAGCTTTGCAAAATGATGAGAGGGCAAACTACCAACTTGATGTCAAGTTTCAGGAATCCTATCTGACTAAAGTTGTGTCTCTTCTACAATGTCAACTGTCAGAGGGGGCAGCATCTGACAAGAATGCTGGAGTTTCTGACTCAGAATGCGGTATGGCACAGAGTGGTTCTGAACCTGATGAGATTGAGGAAGGAGAGCTTCCAGACAGTCATGTTGTCTCTGGAGGGGAACATGTGGATGTCATTATTGGAGCCGCTGTGGCAGATGGCAAGGTGACCCCTAAGGTTCAGGCTCTGATCAAAATACTTCTCAAGTATCAGCATACAGAAGACTTTCGTGCAATCATCTTTGTTGAGCGTGTTGTTTCTGCTTTAGTTCTACCCAAGGTTTTTGCGGAGCTTCCATCTCTGAGTTTTGTTAAGTGTGCGAGCTTGATTGGCCACAACAATAGTCAGGAAATGAGGACCTCACAAATGCAGGATACAATTGCTAGGTTCCGTGATGGACGAGTCACGTTGTTAGTTGCCACTAGTGTTGCTGAAGAAGGACTTGATATACGGCAATGCAATGTTGTTATCCGCTTTGACCTTGCAAAGACTGTTTTGGCATATATTCAATCGAGGGGTCGTGCCAGAAAGCCTGGGTCTGATTATATCTTGATGGTTGAGAGGGGGAACTTGTCGCATGAAGCATTTCTAAAGAATGCCAGGGATAGTGAGGAGACTTTGCGGAGAGAAGCAATAGAGAGAACAGACCTGAGTCATATTAAAGACACTTCCAGGTTGATTTCAGTAGATACAAGACCAGGTACTGTTTACCAGGTTGAGTCAACTGGTGCAGTTGTGAGCTTAAATTCTGCTGTTGGCCTTATCCACTTCTACTGCTCTCAGCTACCCAGTGACAGATATTCAATTCTTCGTCCTGAGTTTATAATGGAGAAGCATGAAAAACCAGGAGGTCCTGCTGAATATTCTTGCAAGCTTCAGTTGCCTTGTAATGCACCATTCGAAAATCTTGAGGGCCCCATATGCAGTTCAATGCGCCTTGCTCAACAGGCTGTTTGTCTAGCTGCTTGCAAGAAGCTGCATGAGATGGGAGCGTTCACTGACATGCTATTGCCAGACAAAGGAAGTGGAGAAGAAAGAGAAAAGGCTGAGCAAAATGATGAAGGAGATCCACTTCCGGGGACTGCTAGACATAGGGAGTTTTATCCTGAAGGTGTGGCGGATGTACTAAAGGGAGAATGGATCTTATCTGGAAAAGATGCTTCCAGCAATTCCAAAGAGTTTCATCTCTATATGTACGCTGTTTTGAGTGAAAACATAGGCCATTCAAAGGATCCGTTCTTGACTCAAGTTTCAGATTTTGCAGTACTTTTTGGCAATGAGCTGGATGCAGAGGTGTTATCGATGTCGATGGATCTATTTATCGCACGAACAATGACTACAAAGGCATCCCTTGTCTTTAGAGGGTCAATAGATATTACTGAGAGTCAGTTGGCATCCTTAAAAAGCTTTCATGTAAGATTAATGAGCATTGTCCTGGATGTGGATGTTGAACCTTCCACTACTCCTTGGGATTCTGCAAAAGCATATTTATTTGTTCCAACTGTTAGCGATAAGTCTGTAGATCCTATGAACCAAATTGACTGGCATCTGGTTGAGACAGTAATTGAAACAGATGCATGGAAAAATCCACTTCAGAAGGCTCGACCAGATGTTTATCTTGGCACAAATGAGAGAACTTTAGGTGGAGATAGAAGGGAATATGGATTTGGGAAATTGCGTCATGGCATGGCTTTTGGGCAAAAATCACACCCAACCTATGGAATCAGAGGAGCTATTGCACAGTTTGACATAGTAAAAGCTTCAGGATTGGTTCCTAATAGACAAGCCGTGCAGATGCAAAAGCATAGTAGTAAGACTGCTAATGGGAAATTGATGATGGCAGATACCTGTACTAATGCAGAGGATCTGGTAGGGAGGATAGTTACAGCTGCTCACTCGGGGAAGAGGTTTTATGTTGATTCAATACGCCATGATATGACTGCGGAGAACTCTTTTCCTAGGAAAGAAGGCTATCTTGGTCCTCTGGAGTACAGCTCATATGCTGACTACTATAAGCAAAAGTATGGTGTCGATTTAATGTACAAGCACCAACCTCTTATAAGAGGACGGGGTGTATCATACTGCAAGAATCTTTTGTCCCCTCGATTTGAACACAGTGAAACACACGAAGCCGAATCTGAAGAAGGTCATGACAAAACTTATTATGTCTTTCTTCCTCCTGAGCTATGCCTTGTACACCCCCTGCCTGGATCACTCGTTCGTGGGGCCCAGAGGCTGCCTTCAATAATGAGGAGGGTCGAAAGTATGCTTCTGGCAATTCAACTTAAGAATATGATAAACTATCCAGTCCAGTCTTCCAAGATATTGGAGGCCTTGACTGCTGCCTCCTGCCAGGAGACATTCTGCTATGAAAGGGCAGAGCTTCTAGGAGATGCATATCTCAAATGGGTTGTTAGTAGATTTCTTTTCCTAAAATACCCACAGAAACATGAAGGCCAGCTCACTAGGATGAGGCAGCAAATGGTCAGTAATATGATATTATATCAGTATGCATTGACTAAAGGACTTCAATCCTATATTCAAGCAGATCGCTTTGCTCCATCCAGATGGGCAGCTCCAGGGGTGCTGCCTGTCTTTGATGAGGACACCAGGGATGGAGAGTCATCGTTATTTGATCAGGAGGGATTGATTCCAAAGACAGAGAAGATGGGTCAACTTTCTGATGGATTTGAGGATGATGAAATGGAAGATGGAGAGCTTGAGAGCGATTCAAGCTCTTATAGAGTTTTATCCAGCAAGACACTTGCAGATGTTGTAGAAGCTCTGATTGGGGTGTATTATGTCGAAGGCGGGAAGAATGCTGCGAATCATCTTATGAAATGGATTGGCATTCAGATAGAGTTTGATCCTGATAAGATGGAGTGTACAAGGAAGCCAAATACTGTTCCTGAGAGCATACTTAGGAGCGTTGACTTTGATGCTTTGGAAGGTGCTTTGGATATCAAGTTTAGAGAGAAGGGCCTGCTTGTAGAAGCAATAACTCATGCATCAAGACCATCCTCTGGAGTATCCTGCTATCAGCGATTAGAGTTCGTTGGTGATGCTGTCTTGGATCATCTTATAACTAGGCACTTGTTTTTCACTTACACGGATTTGCCACCAGGACGTCTGACTGACCTTCGAGCTGCTGCTGTAAATAATGAAAACTTTGCACGTGTTGCAGTTAAACACAATCTTCATTTCCATCTTCGACATGGGTCCAGTGCCCTAGAAAAACAGATTACAGAATTTGTAAAGGAAGTTCAAGAAGAATTGTCAAAGCCAGGGTTTAACTCCTTTGGCTTGGGGGACTGCAAAGCTCCCAAAGTCCTTGGTGACATTGTTGAATCCATTGCTGGTGCCATTTTTCTTGACAGTGGACGAGATACCTCTGTTGTTTGGAAGGTTTTTCAGCCTCTTTTGCATCCTATGGTGACCCCTGAGACTCTGCCAATGCATCCTGTGCGGGAGCTACAAGAACGATGCCAGCAGCAGGCAGAAGGCTTAGAATATAGAGCCTGTCGAATTGGAAATTTGGCTACTGTTGAAGTATTCATTGACGGTGTGCAAGTTGGGGCTGCTCAAAATCCTCAAAAGAAAATGGCACAGAAATTAGCTGCCAGAAATGCCCTTGCTGCGTTGAAGGAGAAGGAGGTGGCCAAAACTAAGGAGAAGGATGATGAAAATGGTAAGAAGAAGAAGAATGGAAACCAGACATTCACAAGACAAACATTAAATGATATCTGTTTGCGGAGAAATTGGCCTATGCCATTTTACCGGTGTGTGAATGAGGGTGGTCCAGCACATGCAAAGAGGTTTACATTTGCAGTTCGTGTCAATACTACTGATAGAGGATGGACAGATGAATGTGTTGGAGAGCCAATGCCAAGCGTGAAAAAAGCCAAGGATTCTGCTGCTGTTCTTCTCTTAGAGCTGCTAAATAAATTATACTCGTAA 5892 0.4387 MEDGSVRVSGAIEDDSVVTRSSPSYWLDACEDISCDLIHFDDGSIVSEQVDNNLIQDGLVNDFFGGIDSILDSIKNGSGLPVATETGNGSQDFALALQAEIPDQKDNIAKNGLAGEKHGRAVEVCERSEAETNGYKVSNGNEEGRTLGDSKENGVCDLSREHHVDVEERFGKRARLGSYKNERLYPGRGNYHPKERERCPNRKRPREWDEGDRKEKDSVRRRENFNGCGRRDVRDRDWRDRERGYWERDKSGSNELVFRIGTWEADRYREGKVANDTKQECNGKIEIKTEEPKERVPEEKARKYQLDVLEQAKQRNTIAFLETGAGKTLIAVLLIKSIHESLQKQNKKMLAVFLVPKVPLVYQQAEVIRERTGYHVGHYCGEMGQDFWDARRWQREFETKQVLVMTAQILLNILRHSIIKMETINLLILDECHHAVKKHPYSLVMSEFYHTTPKEKRPSVFGMTASPVNLKGVSSQVDCAIKIRNLESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLCYLHEQIKQMEVEVEEAAKSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAINYALGELGQWCAYKVAHSFLSALQNDERANYQLDVKFQESYLTKVVSLLQCQLSEGAASDKNAGVSDSECGMAQSGSEPDEIEEGELPDSHVVSGGEHVDVIIGAAVADGKVTPKVQALIKILLKYQHTEDFRAIIFVERVVSALVLPKVFAELPSLSFVKCASLIGHNNSQEMRTSQMQDTIARFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNLSHEAFLKNARDSEETLRREAIERTDLSHIKDTSRLISVDTRPGTVYQVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMEKHEKPGGPAEYSCKLQLPCNAPFENLEGPICSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGEEREKAEQNDEGDPLPGTARHREFYPEGVADVLKGEWILSGKDASSNSKEFHLYMYAVLSENIGHSKDPFLTQVSDFAVLFGNELDAEVLSMSMDLFIARTMTTKASLVFRGSIDITESQLASLKSFHVRLMSIVLDVDVEPSTTPWDSAKAYLFVPTVSDKSVDPMNQIDWHLVETVIETDAWKNPLQKARPDVYLGTNERTLGGDRREYGFGKLRHGMAFGQKSHPTYGIRGAIAQFDIVKASGLVPNRQAVQMQKHSSKTANGKLMMADTCTNAEDLVGRIVTAAHSGKRFYVDSIRHDMTAENSFPRKEGYLGPLEYSSYADYYKQKYGVDLMYKHQPLIRGRGVSYCKNLLSPRFEHSETHEAESEEGHDKTYYVFLPPELCLVHPLPGSLVRGAQRLPSIMRRVESMLLAIQLKNMINYPVQSSKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMILYQYALTKGLQSYIQADRFAPSRWAAPGVLPVFDEDTRDGESSLFDQEGLIPKTEKMGQLSDGFEDDEMEDGELESDSSSYRVLSSKTLADVVEALIGVYYVEGGKNAANHLMKWIGIQIEFDPDKMECTRKPNTVPESILRSVDFDALEGALDIKFREKGLLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHNLHFHLRHGSSALEKQITEFVKEVQEELSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTSVVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYRACRIGNLATVEVFIDGVQVGAAQNPQKKMAQKLAARNALAALKEKEVAKTKEKDDENGKKKKNGNQTFTRQTLNDICLRRNWPMPFYRCVNEGGPAHAKRFTFAVRVNTTDRGWTDECVGEPMPSVKKAKDSAAVLLLELLNKLYS 1963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2706g00014 1963 CDD DEXHc_dicer 300 499 - -
Pral2706g00014 1963 FunFam Endoribonuclease Dicer 1 1259 1377 - -
Pral2706g00014 1963 Gene3D - 295 539 IPR027417 -
Pral2706g00014 1963 MobiDBLite consensus disorder prediction 187 221 - -
Pral2706g00014 1963 SUPERFAMILY RNase III domain-like 1623 1794 IPR036389 GO:0004525|GO:0006396
Pral2706g00014 1963 PANTHER DICER-RELATED 1253 1863 - -
Pral2706g00014 1963 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 308 485 IPR014001 -
Pral2706g00014 1963 SUPERFAMILY PAZ domain 1259 1379 IPR036085 GO:0005515
Pral2706g00014 1963 SMART DRBM_3 1799 1860 IPR014720 -
Pral2706g00014 1963 SMART DRBM_3 1886 1959 IPR014720 -
Pral2706g00014 1963 ProSiteProfiles Ribonuclease III family domain profile. 1624 1772 IPR000999 GO:0004525|GO:0006396
Pral2706g00014 1963 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 896 991 IPR005034 GO:0016891
Pral2706g00014 1963 Gene3D Ribonuclease III domain 1401 1597 IPR036389 GO:0004525|GO:0006396
Pral2706g00014 1963 Gene3D Ribonuclease III domain 1619 1793 IPR036389 GO:0004525|GO:0006396
Pral2706g00014 1963 SMART helicmild6 737 823 IPR001650 -
Pral2706g00014 1963 SMART riboneu5 1418 1603 IPR000999 GO:0004525|GO:0006396
Pral2706g00014 1963 SMART riboneu5 1639 1795 IPR000999 GO:0004525|GO:0006396
Pral2706g00014 1963 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 708 868 IPR001650 -
Pral2706g00014 1963 FunFam Endoribonuclease dicer-like protein 296 536 - -
Pral2706g00014 1963 FunFam Endoribonuclease dicer-like 1 891 992 - -
Pral2706g00014 1963 ProSiteProfiles PAZ domain profile. 1239 1379 IPR003100 GO:0005515
Pral2706g00014 1963 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1885 1958 - -
Pral2706g00014 1963 CDD RIBOc 1418 1601 IPR000999 GO:0004525|GO:0006396
Pral2706g00014 1963 SUPERFAMILY RNase III domain-like 1395 1601 IPR036389 GO:0004525|GO:0006396
Pral2706g00014 1963 Gene3D - 1891 1961 - -
Pral2706g00014 1963 MobiDBLite consensus disorder prediction 129 154 - -
Pral2706g00014 1963 Pfam Dicer dimerisation domain 896 984 - -
Pral2706g00014 1963 CDD RIBOc 1640 1795 IPR000999 GO:0004525|GO:0006396
Pral2706g00014 1963 MobiDBLite consensus disorder prediction 1862 1880 - -
Pral2706g00014 1963 SMART PAZ_2_a_3 1239 1403 IPR003100 GO:0005515
Pral2706g00014 1963 MobiDBLite consensus disorder prediction 181 221 - -
Pral2706g00014 1963 CDD SF2_C_dicer 701 831 - -
Pral2706g00014 1963 FunFam endoribonuclease Dicer homolog 1 1891 1960 - -
Pral2706g00014 1963 MobiDBLite consensus disorder prediction 982 1009 - -
Pral2706g00014 1963 Pfam Helicase conserved C-terminal domain 704 821 IPR001650 -
Pral2706g00014 1963 SUPERFAMILY dsRNA-binding domain-like 1889 1959 - -
Pral2706g00014 1963 Gene3D - 1796 1875 - -
Pral2706g00014 1963 SMART ultradead3 297 500 IPR014001 -
Pral2706g00014 1963 Pfam Ribonuclease III domain 1436 1583 IPR000999 GO:0004525|GO:0006396
Pral2706g00014 1963 Pfam Ribonuclease III domain 1659 1772 IPR000999 GO:0004525|GO:0006396
Pral2706g00014 1963 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1798 1861 IPR014720 -
Pral2706g00014 1963 Pfam Type III restriction enzyme, res subunit 307 467 IPR006935 GO:0003677|GO:0005524|GO:0016787
Pral2706g00014 1963 Gene3D paz domain 1257 1377 - -
Pral2706g00014 1963 FunFam Endoribonuclease dicer-like 1 695 857 - -
Pral2706g00014 1963 Gene3D - 694 859 IPR027417 -
Pral2706g00014 1963 ProSitePatterns Ribonuclease III family signature. 1659 1667 IPR000999 GO:0004525|GO:0006396
Pral2706g00014 1963 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 348 834 IPR027417 -
Pral2706g00014 1963 MobiDBLite consensus disorder prediction 984 1009 - -
Pral2706g00014 1963 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1885 1960 IPR014720 -
Pral2706g00014 1963 FunFam Endoribonuclease dicer-like protein 1401 1595 - -
Pral2706g00014 1963 Pfam PAZ domain 1257 1399 IPR003100 GO:0005515
Pral2706g00014 1963 Gene3D Dicer dimerisation domain 891 993 IPR038248 -
Pral2706g00014 1963 CDD DSRM_DCL_plant 1891 1952 - -
Pral2706g00014 1963 MobiDBLite consensus disorder prediction 1862 1883 - -
Pral2706g00014 1963 MobiDBLite consensus disorder prediction 648 676 - -
Pral2706g00014 1963 SUPERFAMILY dsRNA-binding domain-like 1754 1866 - -
Pral2706g00014 1963 FunFam Endoribonuclease dicer-like 1 1619 1793 - -
Pral2706g00014 1963 ProSiteProfiles Ribonuclease III family domain profile. 1422 1583 IPR000999 GO:0004525|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2706g00014 Pral-Chr2706 73323 84525 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2706g00014 720 863 Eukaryotic Initiation Factors Gene Family AT5G11200 28.571 1.10e-06 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2706g00014 K11592 - gmx:100811631 3223.34