Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2706g00009 ATGGAATTGCTGATGCAAGATGTCAAAATGCATTCCCATGATATAGAAGAAGACGAGGAGGAGGAGGAGGAAGAAGCAGAGTTAGCTAGAGAGGAAAGCAGCAACAGGTTAGCATCAGGACCGGCCACCAATTTCGCCGCTAATCACAGAAAGCTAGACCACATGGAGTTGTCACTGGGAGGAATTGGAACCGCCAAAGACGATGAAGAACAAGAAGGAGCTAATTTCCATGGAGGAGGAAGCAGCAGTAACGATGTTGGTGCTACTATTGAGAAAGAGCACATGTTCGATAAAGTCGTCACTCCCAGTGACGTAGGCAAGCTCAACCGTCTCGTAATACCAAAGCAACACGCAGAGAAGTACTTCCCTCTGGATTCCTCCTCCAACGAGAAAGGACTGCTCTTGAATTTCGAGGACCGGAACGGCAAGCTATGGCGGTTCCGGTACTCCTATTGGAACAGTAGCCAGAGCTATGTGATGACCAAAGGTTGGAGCCGCTTCGTCAAGGAGAAGAAGCTCGACGCCGGAGACATTGTCTCGTTTCACCGAGGCGCCGGAGAGTCGTATCGGCACCGGTTGTACATAGATTGGAGGCGTAGACCTGATCACGGCCCAGCCGGCCCTGATCCCAACTTGATTACACCTTTTCTTCTTCATCATCCCCATCAGCCGCAATTTTCTCAGTACTCTATCAGATGGGGCGGCCGACTGTTCTCGCTTCCCTCTCCGGCGCCGCCGCGACCACTGAACCATAGTAATATGTTTCCCTTATATCATCACCAGCAGCAACAAGAGCGACATCATCATCCGCGGCAGTACCAAGGCCATCATCATGATGCGATGAATTCAAGATCTGCAGGTTCGGTGTATTCGAACTTGATAGGGCAACAAGAAGTAAGAAATGTTCCGATGATTATAGATTCTGTTCCAGTTGATCATTATCATTCTCATCATCAAAACTATTACCATGGCAAAAATAGTAGTGCTACTAATACTACTGCTGGTAAAAGACTTAGGCTATTTGGGGTAAACATGGAATGTGCTTCTTCTTCGTCGTCTTCTTCATCACCATCAGTAGAAGAATCCAGATGTTGTAATGCGACAGTAATGGCTAATCCATCAATTTCCTCTTCGTCTTCTATTATCCCACCACCACCTCTTCATCAGTATCTGAGGTTACCCCATGCGGATCCAATTTCTTCGTCGTCATCGTTATCATCAGCAAGATTTCAGAGTCATCAGAAAGGGGAAACTTCGGTGCTTTTTGATTTGGATCCCTCTTTGCATTATAGGCAGTGA 1299 0.4719 MELLMQDVKMHSHDIEEDEEEEEEEAELAREESSNRLASGPATNFAANHRKLDHMELSLGGIGTAKDDEEQEGANFHGGGSSSNDVGATIEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFHRGAGESYRHRLYIDWRRRPDHGPAGPDPNLITPFLLHHPHQPQFSQYSIRWGGRLFSLPSPAPPRPLNHSNMFPLYHHQQQQERHHHPRQYQGHHHDAMNSRSAGSVYSNLIGQQEVRNVPMIIDSVPVDHYHSHHQNYYHGKNSSATNTTAGKRLRLFGVNMECASSSSSSSSPSVEESRCCNATVMANPSISSSSSIIPPPPLHQYLRLPHADPISSSSSLSSARFQSHQKGETSVLFDLDPSLHYRQ 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2706g00009 432 Coils Coil 1 36 - -
Pral2706g00009 432 MobiDBLite consensus disorder prediction 262 283 - -
Pral2706g00009 432 SMART B3_2 96 201 IPR003340 GO:0003677
Pral2706g00009 432 MobiDBLite consensus disorder prediction 1 15 - -
Pral2706g00009 432 MobiDBLite consensus disorder prediction 1 49 - -
Pral2706g00009 432 FunFam B3 domain-containing protein 89 207 - -
Pral2706g00009 432 Pfam B3 DNA binding domain 96 200 IPR003340 GO:0003677
Pral2706g00009 432 CDD B3_DNA 94 183 IPR003340 GO:0003677
Pral2706g00009 432 MobiDBLite consensus disorder prediction 392 411 - -
Pral2706g00009 432 ProSiteProfiles B3 DNA-binding domain profile. 96 199 IPR003340 GO:0003677
Pral2706g00009 432 SUPERFAMILY DNA-binding pseudobarrel domain 93 199 IPR015300 -
Pral2706g00009 432 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 20 357 IPR044800 GO:0003700
Pral2706g00009 432 MobiDBLite consensus disorder prediction 396 411 - -
Pral2706g00009 432 Gene3D - 89 205 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2706g00009 Pral-Chr2706 50573 53731 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2706g00009 91 354 RAV Transcription Factor Family AT2G46870 53.676 2.15e-78 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pral2706g00009 B3 1.6e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2706g00009 K09287 - gmx:100778733 348.977