Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2705g00005 ATGAAGACAAGAAGCTTTGCTGCTGGCATAACTAAACCGAGTTCCCTACTGGCACAGACAAAAATGCCCATTTTAACGTTTTGTCATTCTAAGTCGATTCCTTCGTTAACTCTACAGCTACCTTGTAACTGCATGAGAAGAATGGGTTTGATTACGCAACTTAAGTGTTCTGTTGCTAATAGAACGTTGACTTCTAGCTCTGTAGCTTCACCCACATCCAAACCAGACTCCCCCCGCTTGAACAGGAAGCAAGGGCGTTCATCTTCATTGTATAGTCGTCCTAGTTTATCAGACATGAACAAAGAGAGGATGGCAAACCGTGAAAAGGTTTATGCATTCTTGCGGGGGATTGGTATTGTTCCTGATGAGCTTGATGGCCTGGAACTTCCAGTGACAGTCGAAGTTATGAGGGAACGAGTAGATTTTCTTCACAATTTAGGGCTTACAATTGAAGACATCAACAATTATCCGTTAGTTCTTGGCTGCAGTGTCAAAAAGAATATGATTCCCGTCCTTGATTACCTTGGTAAATTGGGAGTCAGGAAATCTACATTCACGCAGTTCTTGCGGAGATACCCACAAGTTCTTCATGCTAGTGTTGTTGTTGACCTCGAGCCAGTGGTCAAGTATCTTCAGGGGATGGATATCAAGCCCAATGATATTCCCCGGGTTCTTGAGACGTATCCAGAAGTGCTAGGATTTAAGCTTGAGGGAACCATGAGCACATCAGTTGCTTATTTGGTTGGCATTGGTGTTGGAAGAAGAGAAGGCCGGAAACCAAGAGCGCCGAACATGAAGACCATTCTCTCCAGTGAAACGATGGACATTCCCGATGGGGTGTCTGTCAAAGTCAAAGCTAAGATCATTGAGGTAGAGGGACCTCGCGGCAAGCTTGTCCGTGATTTTAAGCACTTGAATCTCGATTTTCAACTCGTCACCGACGAGGAGGGGAAGAAAAAGCTTAAGGTCGATGCCTGGTTTGGATCCAGGAAAACCTCTGCTGCCATTCGCACGGCCCTCAGTCATGTAGGAAATCTCATCACTGGCGTTACAAGGGGTTACCGCTATAAGATGAGGTTTGTCTATGCGCATTTTCCTATCAATGCCAGCATTACCAACAACAACAAGGCCATTGAGATCCGAAACTTCCTTGGTGAGAAAAAGGTGAGGAAAGTGGATATGCTTGAGGGAGTTTCAATTATACGATCTGACAAGGTTAAGGATGAGTTGGTATTGGATGGAAACGATATTGAGTTGGTCTCTCGTTCTGCCGCCCTCATCAATCAGAAATGTCATGTCAAGAATAAAGATATCCGGAAGTTTCTCGATGGCATTTACGTTAGCGAGAGGGGAACAATCCTCGAAGAGTAG 1371 0.4486 MKTRSFAAGITKPSSLLAQTKMPILTFCHSKSIPSLTLQLPCNCMRRMGLITQLKCSVANRTLTSSSVASPTSKPDSPRLNRKQGRSSSLYSRPSLSDMNKERMANREKVYAFLRGIGIVPDELDGLELPVTVEVMRERVDFLHNLGLTIEDINNYPLVLGCSVKKNMIPVLDYLGKLGVRKSTFTQFLRRYPQVLHASVVVDLEPVVKYLQGMDIKPNDIPRVLETYPEVLGFKLEGTMSTSVAYLVGIGVGRREGRKPRAPNMKTILSSETMDIPDGVSVKVKAKIIEVEGPRGKLVRDFKHLNLDFQLVTDEEGKKKLKVDAWFGSRKTSAAIRTALSHVGNLITGVTRGYRYKMRFVYAHFPINASITNNNKAIEIRNFLGEKKVRKVDMLEGVSIIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSERGTILEE 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2705g00005 456 Gene3D Transcription termination factor 3, mitochondrial 137 269 IPR038538 -
Pral2705g00005 456 MobiDBLite consensus disorder prediction 65 96 - -
Pral2705g00005 456 Pfam Ribosomal protein L6 365 444 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Pral2705g00005 456 Pfam Ribosomal protein L6 276 353 IPR020040 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Pral2705g00005 456 Gene3D - 270 353 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Pral2705g00005 456 FunFam 60S ribosomal protein L9 354 456 - -
Pral2705g00005 456 Gene3D - 354 456 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Pral2705g00005 456 FunFam Transcription termination factor mterf4, chloroplastic 136 264 - -
Pral2705g00005 456 SMART mt_12 87 120 IPR003690 GO:0003690|GO:0006355
Pral2705g00005 456 SMART mt_12 222 253 IPR003690 GO:0003690|GO:0006355
Pral2705g00005 456 SMART mt_12 150 181 IPR003690 GO:0003690|GO:0006355
Pral2705g00005 456 SMART mt_12 186 217 IPR003690 GO:0003690|GO:0006355
Pral2705g00005 456 FunFam 60S ribosomal protein L9 265 353 - -
Pral2705g00005 456 SUPERFAMILY Ribosomal protein L6 354 450 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Pral2705g00005 456 MobiDBLite consensus disorder prediction 65 100 - -
Pral2705g00005 456 PANTHER 60S/50S RIBOSOMAL PROTEIN L6/L9 265 454 IPR000702 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Pral2705g00005 456 Pfam mTERF 172 256 IPR003690 GO:0003690|GO:0006355
Pral2705g00005 456 ProSitePatterns Ribosomal protein L6 signature 2. 429 450 IPR002359 GO:0003735|GO:0005840|GO:0006412
Pral2705g00005 456 SUPERFAMILY Ribosomal protein L6 265 353 IPR036789 GO:0003735|GO:0005840|GO:0006412|GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2705g00005 Pral-Chr2705 15834 31225 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2705g00005 265 456 Cytoplasmic Ribosomal Protein Gene Family AT1G33140 82.902 8.13e-115 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Pral2705g00005 mTERF 3.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2705g00005 K15031 - tcc:108660473 387.111