Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2698g00006 ATGTCAGAGGAAGCGATGAAACATCAGTACATCACTGATGACTTGAAAAGAAAAGCATCATTCAAGAAAAGGGAAGCAATTATCATGAAAAAGATAAGTGAACTTAGCATCCTTTGTGGAGTTGAGGCTGGGGCAATCATTTACAGTGGTCCCTCTGATCCTCAACCAGAGGTTTGGCCGGACCATGAAGGTGTCCAGCAAGTGATTGAGAGGTGCCGAGGCGGACCTGTCTCGGAGAGGGCCTTGAACAAAGAGGCAACAATTCAGAAGAGGATTAAAAAAGGGAAAGAACTTCTGATGAGAAGGAGAAAAGAGAATCGTACAGAAGAGATTTCCCAACTCATGATACGTTGTATGTTAGGGAAAGCAACGCCCAGCCCTGCAGATTGGCATGATATGAAGATGGTAGTTGAGCAGACTTTGAAGAAAATTAACTCTTGA 441 0.4376 MSEEAMKHQYITDDLKRKASFKKREAIIMKKISELSILCGVEAGAIIYSGPSDPQPEVWPDHEGVQQVIERCRGGPVSERALNKEATIQKRIKKGKELLMRRRKENRTEEISQLMIRCMLGKATPSPADWHDMKMVVEQTLKKINS 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2698g00006 146 CDD MADS_SRF_like 9 83 IPR033897 GO:0000981|GO:0000987|GO:0045944
Pral2698g00006 146 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Pral2698g00006 146 SUPERFAMILY SRF-like 6 90 IPR036879 GO:0003677|GO:0046983
Pral2698g00006 146 PANTHER MADS BOX PROTEIN 8 119 - -
Pral2698g00006 146 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Pral2698g00006 146 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Pral2698g00006 146 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2698g00006 Pral-Chr2698 87129 87569 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2698g00006 1 145 Type I MADS-box Gene Family AT5G48670 40.397 1.45e-28 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pral2698g00006 SRF-TF 9.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2698g00006 - - pcin:129319512 187.963