Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2684g00009 ATGACAAGCTTTTATGATACTGAGAAGAAGGGCAGCAATTGGTTCGACAATGGCAAAGAGGTTATACGTGGGAAGCCAGAAAAAGGTTTGAGGCCAAAGCGATCAACCATTGAATCTGAGTCTCTTGCTTTTGAGCGAGCAAAAGAAGTTCAAGCAAATCTATCCATTCAATTTCCAAGCCTTATCAAGTTCATGCTCCCATCACATGTTTCTGGTGGATTTTGGCTAGGTCTTCCTAAACCTTTCTGTAAAACGCATTTGCCGAAGGTTGATACTACAATTGTTTTGGAAGATGAGAGTGGAAGAGAATACGAAACAAAATATCTTGCCGACAAGGTGGGCTTAAGTGGTGGATGGAGAGGCTTCTCCACGGCTCACAATTTACGTAAGGGAGATGTTTTGGTTTTCCATTTAATCCATCCTTGCAAGTTCAAGGTATACATCATACGATCTCATGGGGCAAACGAGGTGGATGTTGCGCTTAGCCTTCTACATTTAGATGGTTGCGTGAAACAACATGATTCTAATGTTTCTCAAGAAAACGATCCAAGCGATAGCACGATGATATGTGATGCTAACATGCCGTCATTAGAACAACCTGAAAATACTAGTGATCTAGATCAAAATCTTGGCTATGAAGTTTTGAATGGGATAAGATTATCAGGATCTACAATCACTTTCCAACAAGTCACAAGTATTGAGAATTTCAGCATTGTGGTTGATGGTCTGGTACTTGACTCAGAACTATCCAAACACCTCAAGACCAAGTACTATGAACTTTGTTGCAGTCAGGGAATGTTTCTTCATGAGCATCTTCTTGAAGGTCAGAACTGTAAACTTGTTGTTGGAATGATCTGCGAGACCATTAATATTGCCGATGCCATTAGAGCCAGCAAGATCACAACCTCTTCGGATAGTTTTGAGGTGTGGTATAAATCTTTAAAAGCCCTTGAAATGTTCGGCATGAATGTTAGTTTCTTGCTTGCTAGGCTAGAACAACTCATGAGTTTAGCTTCAAAATCCAAGAGGTACACAGAGACGAGAATTAAACGAGATCAAGCCGAGGAGGAAAAGAAAGTTCTTGAACAAAAAATTGAGGAAGTGAAAAAGACCATAAGGAGACTTGATGGTGAGCTTGACTCCCAAAATCAGAACCTTGAGAGATTAGAAGCTGAGTTTCAAGATCTGGCTAAAACTCCCTGGTGA 1206 0.4055 MTSFYDTEKKGSNWFDNGKEVIRGKPEKGLRPKRSTIESESLAFERAKEVQANLSIQFPSLIKFMLPSHVSGGFWLGLPKPFCKTHLPKVDTTIVLEDESGREYETKYLADKVGLSGGWRGFSTAHNLRKGDVLVFHLIHPCKFKVYIIRSHGANEVDVALSLLHLDGCVKQHDSNVSQENDPSDSTMICDANMPSLEQPENTSDLDQNLGYEVLNGIRLSGSTITFQQVTSIENFSIVVDGLVLDSELSKHLKTKYYELCCSQGMFLHEHLLEGQNCKLVVGMICETINIADAIRASKITTSSDSFEVWYKSLKALEMFGMNVSFLLARLEQLMSLASKSKRYTETRIKRDQAEEEKKVLEQKIEEVKKTIRRLDGELDSQNQNLERLEAEFQDLAKTPW 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2684g00009 401 CDD B3_DNA 59 150 IPR003340 GO:0003677
Pral2684g00009 401 Pfam Protein of unknown function (DUF724) 281 392 IPR007930 -
Pral2684g00009 401 SMART B3_2 61 152 IPR003340 GO:0003677
Pral2684g00009 401 SUPERFAMILY DNA-binding pseudobarrel domain 55 152 IPR015300 -
Pral2684g00009 401 ProSiteProfiles B3 DNA-binding domain profile. 61 152 IPR003340 GO:0003677
Pral2684g00009 401 Coils Coil 337 399 - -
Pral2684g00009 401 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 34 152 IPR044837 -
Pral2684g00009 401 Gene3D - 36 152 IPR015300 -
Pral2684g00009 401 Pfam B3 DNA binding domain 62 150 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2684g00009 Pral-Chr2684 84334 89019 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2684g00009 43 150 B3 DNA Binding Superfamily AT3G19184 58.333 1.16e-39 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pral2684g00009 DUF724 2.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2684g00009 - - pcin:129286163 480.33