Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2684g00005 ATGAAAGAAGAGAGTCCTAGCACTCCAAATTTGCCAAGCACGGGCAGTCCTGAAAGCCCTTGTTTTAAATCATCATCATCAACAAACAAAGAACAAGATCGGTTTCTTCCCATCGCAAACGTTGGGAGGATCATGAAGAAAGTGATGCCTGCAAATGGAAAAATCTCAAAGGACGCTAAAGAAACTGTTCAAGAATGTGTTTCTGAGTTCATCAGCTTCGTCACCGGCGAGGCCTCCGATAAGTGCCAGAGAGAGAAAAGAAAGACCATTAATGGCGATGACATTATCTGGGCCATTACCACACTTGGCTTTGAGGACTATGTGGATCCTTTGAAATCTTACCTTCAGAAATATAGAGAGATAGAAGGAGAGAAGCTCAATATTCCCAAACAACAACGTTCTGATCATCATCATCAACAAAGGCTACAGAATCATCATCACCATCATCATCAAGAACACAATAATAATGCTAATAGTATTAATTTTAATAATAATAATCTACCTCTAAATAATAGTGTATATTCTTCAACCATTCTCATTCCTCCTCCTCCTCCTCCTCCGCCTCCTTGTGTGACCACCGATCAGACATTTTCCTTACCTTTCTCATCAAATTCAATTCAGAAACAATTACAGCCCCAAGACAAAATGGATTCTTCAGTGGGAAATTGGTAA 672 0.3973 MKEESPSTPNLPSTGSPESPCFKSSSSTNKEQDRFLPIANVGRIMKKVMPANGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVDPLKSYLQKYREIEGEKLNIPKQQRSDHHHQQRLQNHHHHHHQEHNNNANSINFNNNNLPLNNSVYSSTILIPPPPPPPPPCVTTDQTFSLPFSSNSIQKQLQPQDKMDSSVGNW 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2684g00005 223 ProSitePatterns NF-YB/HAP3 subunit signature. 66 82 IPR003956 GO:0005634|GO:0006355|GO:0043565
Pral2684g00005 223 MobiDBLite consensus disorder prediction 128 164 - -
Pral2684g00005 223 MobiDBLite consensus disorder prediction 1 36 - -
Pral2684g00005 223 SUPERFAMILY Histone-fold 32 151 IPR009072 GO:0046982
Pral2684g00005 223 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 24 162 IPR027113 GO:0001228|GO:0006355|GO:0016602
Pral2684g00005 223 MobiDBLite consensus disorder prediction 178 193 - -
Pral2684g00005 223 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 35 99 IPR003958 -
Pral2684g00005 223 MobiDBLite consensus disorder prediction 1 34 - -
Pral2684g00005 223 Gene3D Histone, subunit A 22 163 IPR009072 GO:0046982
Pral2684g00005 223 MobiDBLite consensus disorder prediction 177 198 - -
Pral2684g00005 223 FunFam Nuclear transcription factor Y subunit B-3 24 152 - -
Pral2684g00005 223 PRINTS CCAAT-binding transcription factor subunit A signature 82 100 - -
Pral2684g00005 223 PRINTS CCAAT-binding transcription factor subunit A signature 63 81 - -
Pral2684g00005 223 PRINTS CCAAT-binding transcription factor subunit A signature 101 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2684g00005 Pral-Chr2684 59046 59717 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2684g00005 1 160 CCAAT-HAP3 Transcription Factor Family AT2G13570 68.862 6.99e-67 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pral2684g00005 CBFD_NFYB_HMF 3.3e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2684g00005 K08065 - tcc:18611900 266.159