Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2684g00004 ATGGCTCCCTTTTTTGATGCAATTCGTTCCCTTAATCCTAGCAGGCAGAATTGGCGGATTAGAGTTTGTGTAGTTCGTCTGTGGACCATGCCTGGCCGCTATTCCCATGAAGAACTCTCCTCTATTGAGATGCTCCTTCGAGATGAGGATGGTGATAACATACATGCTCAGGTTAAGAGTCCCTTCATTACTCATCATCTGAATAACTTCACAGAAGGGAAGCTTTGTGTTATTTCCTACTTCATGGTTACACCGAATTATGGGTCGTATAGGACAACTGATCACCCATATCGAATGACTTTATGTATTCCAGGGCAGTCCGTCCCCTTCCGGAAGATGACCGTATTCATCAGTTTGGATTTGCCTTCCGTTCATGTCATCGGGATGTTGTCTGCTATTGGAGAGAAGGAGGAGTGCAATATCAATGGCCAAACTCAGCACAGAGTTAATGTGGAACTGATGGATGATGGAATGGAGAAGCTTGAGTGCACACTCTGGGGGGATTTTGCAGATGAGATTCTCCAATTCATGGCAGGGGATATATCCAGTCCTGTTGTTGTCATTATCCAACTATCCAAGAGGAGAATCTCAAACTCTATGTATTCTTCAAGAATCTTCATCCATCCCTCCATTCCTAAAGTGGAACATTTCATGTCAAAATTGAAGGCAAAAGGTGTCGATGTGGGCCAAGTTCCGGCTAGGATTGCTCCCCAATCAACAATGAGTGTTGCTGATGAGTTACTGTCTGTTGAATTAAGGCGAAAGATATCTGATCTTCGTTCTTTAACTGGGGATGGTGTGTGTGTTGTTCTAGCGGATATAGTAGACTTTCGTACTGAGAAGGGTTGGATGTATGTCTCTTGTAAGCATTGCGGAAAAAAAGTGGTGCCCGATGGGGAGGGGTTTTTTTGTGAGAAGTGTGCTTCCATTATTAAGGTGGTTGTACCAAGGTATATGGTTACTTGTGAGGTTATGGATGAGAGTGGATCCTGCAGCGTTGTCATATTTGACAGAGAGTTTTCTAGGATGGTTGGTTGTTCTACAACAGAGATGAGGAACCGCATTCTCAAACAGTTTGGTGATGAAGGGGTTGGTGATGGAGATGGAATCACAGCAAGCATCTTAGAGCCCCTCACTTGGAAGAGATACTTATTTAAACTGCGTGTTCCTGAGGATTATGTAAAGACGTATTCAAACACATGTATCGCTGTGCGCTTGACCAGTGATAAGATATAA 1236 0.4361 MAPFFDAIRSLNPSRQNWRIRVCVVRLWTMPGRYSHEELSSIEMLLRDEDGDNIHAQVKSPFITHHLNNFTEGKLCVISYFMVTPNYGSYRTTDHPYRMTLCIPGQSVPFRKMTVFISLDLPSVHVIGMLSAIGEKEECNINGQTQHRVNVELMDDGMEKLECTLWGDFADEILQFMAGDISSPVVVIIQLSKRRISNSMYSSRIFIHPSIPKVEHFMSKLKAKGVDVGQVPARIAPQSTMSVADELLSVELRRKISDLRSLTGDGVCVVLADIVDFRTEKGWMYVSCKHCGKKVVPDGEGFFCEKCASIIKVVVPRYMVTCEVMDESGSCSVVIFDREFSRMVGCSTTEMRNRILKQFGDEGVGDGDGITASILEPLTWKRYLFKLRVPEDYVKTYSNTCIAVRLTSDKI 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2684g00004 411 Gene3D - 5 102 IPR012340 -
Pral2684g00004 411 PANTHER OS03G0429900 PROTEIN 8 388 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Pral2684g00004 411 Pfam Domain of unknown function DUF223 43 101 IPR003871 -
Pral2684g00004 411 Pfam Replication factor-A C terminal domain 274 394 IPR013955 -
Pral2684g00004 411 SUPERFAMILY Nucleic acid-binding proteins 264 399 IPR012340 -
Pral2684g00004 411 Gene3D - 106 228 IPR012340 -
Pral2684g00004 411 Gene3D - 241 409 IPR012340 -
Pral2684g00004 411 CDD RPA1_DBD_B_like 126 222 - -
Pral2684g00004 411 SUPERFAMILY Nucleic acid-binding proteins 124 226 IPR012340 -
Pral2684g00004 411 SUPERFAMILY Nucleic acid-binding proteins 5 102 IPR012340 -
Pral2684g00004 411 CDD RPA1_DBD_C 256 411 IPR047192 -
Pral2684g00004 411 CDD RPA1_DBD_A_like 19 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2684g00004 Pral-Chr2684 50306 52371 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2684g00004 10 392 Core DNA Replication Machinery Family AT5G61000 22.705 1.45e-15 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2684g00004 - - pcin:129299041 298.13