Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2679g00006 GTAATTGATATTGAGGAGATGGCATGGGCTCCTAAATATGGTTTGAAAGGGATGATTGATGCTTCTGTCAGTGTGAAGGTTCTACCAAAGGGAAATGAAGATGAGAAGGTCATGCCATTAGAGTTCAAAACAGGGAAGGCAATGTCTGGCCAGTCATCTATAGAACATCGTGCCCAAGTGATCTTGTACACTCTTCTGATGTCTGAAAGGTACCTGAAGAATATTGATTCTGGTCTTCTATATTATCTCCGCTCAGATCAGACAGAAGGCATTGTGGTTCAAAGATCTGACTTAGTTGGGCTAATCATGCGACGAAATGAACTTGCAAGTGATATTCTGAGGGCGTTAACCACACAACAACTGCCTCCAATGTTACAGAGTCCAAGCATTTGCAGAGGTTGTCGCCATCTTAATGTTTGCAGCATTTATCATAAGGTTCAAGGAGGAAGTGCGAAGAGTAGTGGATTGGGAGATTTGTTTGACTCACATACTAATCACCTTTCATCTACTTATAGTAAGTTCCTCTGCCATTGGGATCGGCTGATTGACTTAGAAGCAAAAGAGACTGAGCTTGTGAAGAAAGAGATGTGGCGATCACATACTTTTAAAATGTCTGATGGTGATCCTTCTATTGCTTCAACAAACTATTTGGATATCAAACTAAGAAGTGGAGACTACGTGATATTGAGCACTGAATCTAGCCGTCAAGCTATTGCTAGTGGGGTGATTACAGACATTAGTCATGCCCATGTTTCTGCTTCCTTTTCAAAGCGACTGCGGATTCCTGGAAGCCTCTCCACTAGCCAAGATCTTTATAAACAGGTTTGGAGGATTGATAAAGATGAAACTGTGACTTCATTTGCTGTTATGAGGTTTAATCTAGTACAACTTTTCCTACAAAATGATCAAAGTGCTCATCTGAGGAAAATGATTGTTGATCTTGAGGCTCCCAAATTTGACAGTGGATCTATGGTCAGTCAGGACCCAGCAATATCATATGTGTGGTCAGAGAAGAGTTTGAATGATGATCAGCGTAGATCAATCCTCAAGATTCTTACAGCAAAGGATTACGCACTCATACTAGGAATGCCTGGAACAGGGAAGACATCAACCATGGTTCATGCTGTCAAAGCATTATTAATCAGAGGCACATCTATTTTGCTGACAGCCTATACAAACTCAGCTGTAGATAATTTACTTATCAAATTAAAAGCTCAGGGAATTGATTTTGTACGTATTGGAAGACATGAAGCTGTGCATGAGGAGGTTAGAGAACACTGCCTTTCAGCAACGAATGTACAAAATGTTGATGAGATCAAAGTAAGGTTAGAACAAGTTAAAGTAGTTGCAGTTACATGTCTGGGCATCACCAGTCCCTTGCTTGCCAACAGGACTTTTGATGTATGCATTATGGACGAAGCTGGGCAGACAACTCTACCAGTGTCCTTGGGTCCGCTCATGTTTTCCTCAATGTTTGTACTTGTGGGTGATCACTATCAACTTCCTCCGCTTGTACAGAGTGCAGAAGCTCGAGAGAATGGAATGGGTGTAAGTTTATTTTGTAGGCTCTCAGAAGCACATCCACAAGCAATTTCAGCACTACAGAGTCAGTACCGTATGTGTCAGGGCATCATGGACCTGTCAAATGCCTTGATATATGGTGATAGGTTAAGCTGCGGTTCCACTGAGATTGCTAATGCAAAACTTGAGTTCTCTACCTTAAAATGGGGCTTACCTTGGCTAAAAAATGTTTTGAATCCAGACAGGCCAGTGATATTTATTGATACTGATAAATTGCCCGCTTTAGAGGCGAGAGAACAGAAGACCATAAATAACCCTGTTGAAGCTCACATAATTGTTGAGATAGCAAAGGCATTGATAAAAAATGGAATTGGAGAAGAACAAGTTGGCATTATTACCCCCTACAATTCCCAGGCAAACCTCATCCGCCAGGCTGCTTGCGTGACCTCGTTGGAGATTCATACAATTGACAAATACCAGGGTAGAGATAAAGATTGTATATTAGTATCTTTTGTGAGGTCCAGTGAAAACCCATCAAGCTGTGCGTCTTCTCTGCTTGGAGACTGGCATAGGATAAATGTAGCTCTCACACGTGGCAAGAAAAAGCTGATCATGGCGGGTTCCTGTAGAACTCTATCAAAGGTTCCACTACTGAAGCTTCTCATCAAAAAGGTTGAGCAGCAATCGGGTATTATTAGTCTGTCTAAGAAGGATATCTATCAGAAAGGAGAGCTCAAAAGGTGTTCTCACATGAGATGA 2280 0.4158 VIDIEEMAWAPKYGLKGMIDASVSVKVLPKGNEDEKVMPLEFKTGKAMSGQSSIEHRAQVILYTLLMSERYLKNIDSGLLYYLRSDQTEGIVVQRSDLVGLIMRRNELASDILRALTTQQLPPMLQSPSICRGCRHLNVCSIYHKVQGGSAKSSGLGDLFDSHTNHLSSTYSKFLCHWDRLIDLEAKETELVKKEMWRSHTFKMSDGDPSIASTNYLDIKLRSGDYVILSTESSRQAIASGVITDISHAHVSASFSKRLRIPGSLSTSQDLYKQVWRIDKDETVTSFAVMRFNLVQLFLQNDQSAHLRKMIVDLEAPKFDSGSMVSQDPAISYVWSEKSLNDDQRRSILKILTAKDYALILGMPGTGKTSTMVHAVKALLIRGTSILLTAYTNSAVDNLLIKLKAQGIDFVRIGRHEAVHEEVREHCLSATNVQNVDEIKVRLEQVKVVAVTCLGITSPLLANRTFDVCIMDEAGQTTLPVSLGPLMFSSMFVLVGDHYQLPPLVQSAEARENGMGVSLFCRLSEAHPQAISALQSQYRMCQGIMDLSNALIYGDRLSCGSTEIANAKLEFSTLKWGLPWLKNVLNPDRPVIFIDTDKLPALEAREQKTINNPVEAHIIVEIAKALIKNGIGEEQVGIITPYNSQANLIRQAACVTSLEIHTIDKYQGRDKDCILVSFVRSSENPSSCASSLLGDWHRINVALTRGKKKLIMAGSCRTLSKVPLLKLLIKKVEQQSGIISLSKKDIYQKGELKRCSHMR 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2679g00006 759 FunFam DNA replication ATP-dependent helicase/nuclease DNA2 436 537 - -
Pral2679g00006 759 CDD DEXXQc_DNA2 339 539 IPR026851 GO:0017116
Pral2679g00006 759 Pfam DNA replication factor Dna2 1 25 IPR014808 -
Pral2679g00006 759 PANTHER DNA2/NAM7 HELICASE FAMILY 157 734 IPR045055 -
Pral2679g00006 759 Pfam AAA domain 516 716 IPR041679 -
Pral2679g00006 759 FunFam DNA replication ATP-dependent helicase/nuclease DNA2 282 431 - -
Pral2679g00006 759 FunFam DNA replication helicase Dna2 1 141 - -
Pral2679g00006 759 CDD SF1_C_Upf1 540 733 IPR047187 -
Pral2679g00006 759 Gene3D - 2 141 IPR011604 -
Pral2679g00006 759 Gene3D - 538 751 IPR027417 -
Pral2679g00006 759 Gene3D - 264 537 IPR027417 -
Pral2679g00006 759 Pfam Domain of unknown function DUF83 32 141 IPR022765 -
Pral2679g00006 759 FunFam DNA replication helicase 538 751 - -
Pral2679g00006 759 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 339 724 IPR027417 -
Pral2679g00006 759 Pfam AAA domain 442 507 IPR041677 GO:0004386
Pral2679g00006 759 Pfam AAA domain 340 431 IPR041677 GO:0004386
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2679g00006 Pral-Chr2679 215773 223634 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2679g00006 1 481 Core DNA Replication Machinery Family AT1G08840 64.286 0.0 672
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2679g00006 K10742 - gmx:100799415 1196.42