Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2678g00002 ATGTCTCGGCCTCACCCATCACCGTCCGATCAGACCCAAAAGGAAGAAACCTCACCTTCTACCTTTTCGCATCTTATCAGCACCAGTGATACTAAAACCTTCTCCGTCCCAATCTCACATGGTCAAGTAAGCACCTCTTCTGGGTTTGGGTTGATCCAGAAGCTGGATCGATCCCAGCCTCCACATCAAAATCAAGGTAACGATGTGAGAAAAAGAAACTATAGAGGAGTGAGGCAGAGACCATGGGGGAAGTGGGCAGCCGAAATCCGAGACCCTAAAAAAGCAGCTAGGGTGTGGCTTGGCACCTTCGAGACGGCCGAGGATGCAGCCGCTGCTTATGATGCTGCAGCATTAAGGTTCAAAGGAAGCAAAGCTAAACTTAATTTCCCCGAACGTGTTTCTTTAGCTACTTCTTCAGCCGTCCCTTCATCACAAACCCAGCTTCATGCTGCTCCTGCTCCGCCGATACAGGAGGCGGCGCAAACTGTGTCTTGGCCTCCGGCGCCATCGACGGACAATGAAGGGTTCCCAAATCTATTGCAGTACGCGCAGCTACTTCGTGGTGGTGATGCTGACCTCCAAAGAGCTGCTTCGGGACTCCATAGTTATCAGAATGATCCATTTCTTTTTTATCCTTCTACGTTATTCTCGTCATCATCAGGCATGTCTTCTACTTCGTCTGCTTCTATGTCTGGGTCTGATCAACGTCAGGTTCAAGATACGCAGAGAGTAGCACAGGAAGGAGATTATTATGGAGGTTCTTCTTCTCCCGGTTCTTGTTTCCTTGATGAAGGAAACACGAGGAGATAG 810 0.4926 MSRPHPSPSDQTQKEETSPSTFSHLISTSDTKTFSVPISHGQVSTSSGFGLIQKLDRSQPPHQNQGNDVRKRNYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEDAAAAYDAAALRFKGSKAKLNFPERVSLATSSAVPSSQTQLHAAPAPPIQEAAQTVSWPPAPSTDNEGFPNLLQYAQLLRGGDADLQRAASGLHSYQNDPFLFYPSTLFSSSSGMSSTSSASMSGSDQRQVQDTQRVAQEGDYYGGSSSPGSCFLDEGNTRR 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2678g00002 269 SMART rav1_2 73 136 IPR001471 GO:0003700|GO:0006355
Pral2678g00002 269 MobiDBLite consensus disorder prediction 144 176 - -
Pral2678g00002 269 Pfam AP2 domain 73 122 IPR001471 GO:0003700|GO:0006355
Pral2678g00002 269 MobiDBLite consensus disorder prediction 221 269 - -
Pral2678g00002 269 MobiDBLite consensus disorder prediction 1 76 - -
Pral2678g00002 269 SUPERFAMILY DNA-binding domain 73 131 IPR016177 GO:0003677
Pral2678g00002 269 FunFam Ethylene-responsive transcription factor 2 72 131 - -
Pral2678g00002 269 CDD AP2 73 131 IPR001471 GO:0003700|GO:0006355
Pral2678g00002 269 PRINTS Ethylene responsive element binding protein signature 74 85 IPR001471 GO:0003700|GO:0006355
Pral2678g00002 269 PRINTS Ethylene responsive element binding protein signature 96 112 IPR001471 GO:0003700|GO:0006355
Pral2678g00002 269 PANTHER DNA-BINDING DOMAIN 27 224 IPR044808 GO:0003700|GO:0009873
Pral2678g00002 269 Gene3D AP2/ERF domain 72 132 IPR036955 GO:0003700|GO:0006355
Pral2678g00002 269 ProSiteProfiles AP2/ERF domain profile. 73 130 IPR001471 GO:0003700|GO:0006355
Pral2678g00002 269 MobiDBLite consensus disorder prediction 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2678g00002 Pral-Chr2678 10377 12342 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2678g00002 60 144 AP2-EREBP Transcription Factor Family AT5G61890 80.000 3.05e-42 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral2678g00002 AP2 1.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2678g00002 - - gmx:106797385 184.496