Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2674g00054 ATGGTGTTTCGTCCGGGGACATTGCGTTTCGGATCACTGCGGAAGCTTCGGATATTGCTGATACTTTGTATGCTCTGCTCAGTGTGGACCATAATTCCCAGCACTCTGCAGCTATCTGCTATGATGATGCGAATGTTGGCGATCAGTCCTGCCCTTTCTTTGATTTCAGCTGTGGTTATTCCTTGTATGGGACTTGTTGTTGCGTTTCTTGGTCAGAAACTTCGTTCAATATCTAAAAGGGCACATCTTAGCATTGCCACTCTCTCGGCATATCTAAATGAGGTCCTTCCTGCAATTCTTTTTGTGAAAGCAAACAATGCAGATATGTATGAGAGCAGCAGGTTTAAGAGGCTGGCTAGGATCGACTTTTTTGAACGCTTGAACAAGAAGAGGATGAAGGCAGTTATTCCTCAGATTATACAAGCTATTTATTTCGGAGTGCTATTTGTACTTTGTGCGGGTTCAATAGTGGTTTCAAGAGGATCATTCAATGGCTGTAACTTAGTGTCGTTTGTGACATCATTGCTCTTTTTGATTGAACCGATCCAGGATGTGGGAAAAGCATACAATGAATTGAGGCAGGGAGAACCAGCTATTGAACGCTTGTTTGATCTGACCAGGTTCGCAGATAAGGTGGCTGAGAAACCAGATGCTGTTGATTTAGACTCTGTTAGAGGGGAGATAAAGTTTTGTAATGTCTCATTTAAGTACAGTGAAGACATGTCACTCGTTCTGAATGGACTGAATCTTCACATTGGAGCTGGAGAGATAGTTGCTCTTGTTGGTCCCTCTGGTGGAGGGAAAACTACACTTATAAAACTTCTGCTTCGTCTTTATGATCCAGTATCTGGCTGTATACTTGTTGATAATCATAACATCCAAAGCATTCGGTTGCAAAGTTTGAGAAGGCATGTTAGTCTTGTTTCTCAGGATATAACACTTTTTTCAGGTTCAGTTGCTGAAAACATTGGTTACAAGGATCTGACAGCAGAAATTGACATGGAGAGGGTAAAACATGCAGCACAAACTGCTTATGCTGATGAATTTATAAGAGAACTTCCAGAAGGATATAATACCAATATTGGACCAAGGGGCTCAACTTTAAGTGGAGGACAAAGGCAAAGGCTAGCCATTGCCAGGGCTCTATATCAGAATTCTTCTATATTAATACTGGATGAGGCAACTTCTGCTTTAGATAGCAAATCTGAGGAGTTGGTGAGACAAGCTGTAAAGCGATTGATGAAAAATCACACTGTGCTGATAATTGCCCATCGCATGGAAACGGTTCGGATGGCTAAACGAGTATTCCTCTTGGATAGGGGGAAGCTAGAAGAGTTGCCTCGTTCGACTATATTGGGTGGTCACAAGGACTCGTTGTTATCATCTGGAGTGGTGATTTAA 1401 0.4211 MVFRPGTLRFGSLRKLRILLILCMLCSVWTIIPSTLQLSAMMMRMLAISPALSLISAVVIPCMGLVVAFLGQKLRSISKRAHLSIATLSAYLNEVLPAILFVKANNADMYESSRFKRLARIDFFERLNKKRMKAVIPQIIQAIYFGVLFVLCAGSIVVSRGSFNGCNLVSFVTSLLFLIEPIQDVGKAYNELRQGEPAIERLFDLTRFADKVAEKPDAVDLDSVRGEIKFCNVSFKYSEDMSLVLNGLNLHIGAGEIVALVGPSGGGKTTLIKLLLRLYDPVSGCILVDNHNIQSIRLQSLRRHVSLVSQDITLFSGSVAENIGYKDLTAEIDMERVKHAAQTAYADEFIRELPEGYNTNIGPRGSTLSGGQRQRLAIARALYQNSSILILDEATSALDSKSEELVRQAVKRLMKNHTVLIIAHRMETVRMAKRVFLLDRGKLEELPRSTILGGHKDSLLSSGVVI 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2674g00054 466 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 30 445 IPR039421 -
Pral2674g00054 466 FunFam ABC transporter ATP-binding protein 221 462 - -
Pral2674g00054 466 Gene3D ABC transporter type 1, transmembrane domain 20 207 IPR036640 GO:0005524|GO:0016020
Pral2674g00054 466 Pfam ABC transporter 245 396 IPR003439 GO:0005524
Pral2674g00054 466 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 228 465 IPR003439 GO:0005524
Pral2674g00054 466 Gene3D - 218 462 IPR027417 -
Pral2674g00054 466 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 28 194 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral2674g00054 466 CDD ABC_6TM_exporters 30 202 - -
Pral2674g00054 466 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 217 446 IPR027417 -
Pral2674g00054 466 ProSitePatterns ABC transporters family signature. 368 382 IPR017871 GO:0005524|GO:0016887
Pral2674g00054 466 Pfam ABC transporter transmembrane region 30 181 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral2674g00054 466 SMART AAA_5 254 442 IPR003593 GO:0016887
Pral2674g00054 466 SUPERFAMILY ABC transporter transmembrane region 27 207 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2674g00054 Pral-Chr2674 282332 286292 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2674g00054 218 463 Calmodulin-binding Proteins AT2G36910 45.382 2.87e-59 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2674g00054 K02021 - gmx:100788075 669.848