Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2674g00022 ATGGAACAAATCCAAAACATCAACTCGTGCGCACGCGCTTTCAACACAGAGGAAGAAGAAGAAGACCAAAAGGAAGCCATGTTCGAGAAGGCGTTAACGCCGAGCGACGTCGGGAAGCTGAACCGACTGGTGATCCCGAAGCAGCACGCGGAGAAGTATTTACCGCTCAACGGTGGGGCTGGGGACGCCAAGGGCGTGTTGCTGGGTTTCGAGGACGAAACCGGCAAGTGCTGGCGCTTCCGATACTCTTATTGGAACAGTAGCCAGAGTTACGTCTTGACCAAAGGCTGGAGCCGTTACGTCAAGGACAAGCGCCTCGACGCCGGCGACGTCGTTTCCTTTCATCGTCACCTTACAGATTCTCACCGCCTTTTCATCTGCTGGAGGCGCCGCCACCTTCATGCCAGTCCCCCAGTTACCAGAGGTGGCCATGGTGGTGTGAGTGTCGGATGGACCACCCCCACACCTTTGTATTCTGGGCATACTTATCCCGAGCATCAGCCTTTGCCATACCAAACTCAATCTCTTCATGCACCAGGAAGAGTTAACGGTGGGGCTGGGGACGCCAAGGGCGTGTTGCTGGGTTTCGAGGACGAAACCGGCAAGTGCTGGCGCTTCCGATACTCTTATTGGAACAGTAGCCAGAGTTACGTCTTGACCAAAGGCTGGAGCCGTTACGTCAAGGACAAGCGCCTCGACGCCGGCGACGTCGTTTCCTTTCATCGTCACCTTACAGATTCTCACCGCCTTTTCATCTGCTGGAGGCGCCGCCACCTTCATGCCAGTCCCCCAGTTACCAGAGGTGGCCATGGTGGTGTGAGTGTCGGATGGACCACCCCCACACCTTTGTATTCTGGGCATACTTATCCCGAGCATCAGCCTTTGCCATACCAAACTCAATCTCTTCATGCACCAGGAAGAGTTTTACCAGCTCAAAGGTCGGCGGTGGGAAACAGTTCAAGTAAAGTACTTAGACTATTCGGAGTAAACATGGAATGCCAAGCAGAACCAGACGAATCAGGACCTTCCACATCCCAGCACTCCTCCAACGTCTCATCATCATCCACCCATCACCACTTCTACCAATATGAATATCCTCAGCCTTCATATACTTCCAGTCCTCACCGCCACATGGTACGTCAACAATCATACTTCTGA 1158 0.5363 MEQIQNINSCARAFNTEEEEEDQKEAMFEKALTPSDVGKLNRLVIPKQHAEKYLPLNGGAGDAKGVLLGFEDETGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVSFHRHLTDSHRLFICWRRRHLHASPPVTRGGHGGVSVGWTTPTPLYSGHTYPEHQPLPYQTQSLHAPGRVNGGAGDAKGVLLGFEDETGKCWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVSFHRHLTDSHRLFICWRRRHLHASPPVTRGGHGGVSVGWTTPTPLYSGHTYPEHQPLPYQTQSLHAPGRVLPAQRSAVGNSSSKVLRLFGVNMECQAEPDESGPSTSQHSSNVSSSSTHHHFYQYEYPQPSYTSSPHRHMVRQQSYF 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2674g00022 385 CDD B3_DNA 27 122 IPR003340 GO:0003677
Pral2674g00022 385 CDD B3_DNA 196 248 IPR003340 GO:0003677
Pral2674g00022 385 Gene3D - 164 265 IPR015300 -
Pral2674g00022 385 Gene3D - 16 139 IPR015300 -
Pral2674g00022 385 SUPERFAMILY DNA-binding pseudobarrel domain 187 256 IPR015300 -
Pral2674g00022 385 ProSiteProfiles B3 DNA-binding domain profile. 196 258 IPR003340 GO:0003677
Pral2674g00022 385 MobiDBLite consensus disorder prediction 337 385 - -
Pral2674g00022 385 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 13 136 IPR044800 GO:0003700
Pral2674g00022 385 SMART B3_2 28 132 IPR003340 GO:0003677
Pral2674g00022 385 SMART B3_2 153 258 IPR003340 GO:0003677
Pral2674g00022 385 MobiDBLite consensus disorder prediction 334 385 - -
Pral2674g00022 385 Pfam B3 DNA binding domain 189 257 IPR003340 GO:0003677
Pral2674g00022 385 Pfam B3 DNA binding domain 28 131 IPR003340 GO:0003677
Pral2674g00022 385 ProSiteProfiles B3 DNA-binding domain profile. 28 132 IPR003340 GO:0003677
Pral2674g00022 385 SUPERFAMILY DNA-binding pseudobarrel domain 24 130 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2674g00022 Pral-Chr2674 124986 127395 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2674g00022 184 257 RAV Transcription Factor Family AT3G11580 77.215 9.73e-36 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pral2674g00022 B3 5.1e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2674g00022 K09287 - pvy:116124652 219.935