Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2651g00002 ATGCAGACTCATCAGTACTCTAATTTCTCCTACTTATCGTCGACATGTCTGGAAGCTACTGATGAACAACTACTTGACGACGAACACTCCATTTCCCTCTCTCTTGGACCTCCTGGCCAACACCACCACCTTACTAATAATACTTATTCCAAGCTCATGAACCCCACTACTGCTACCACATCCTCTTCATCCAACGACGTCGTATCTCTGCACCATCATCCTCATCTTCTTCATCACCACCAAAACCCTAACTCTGATGTTGGCGTCACCGTCGCGCTTCATATCGGCCTTCCTGCCTCTAATAATAACGCTGCTGGAAGCTCTGGCAAACCCGACCCATTAATGAGTTCTTCTTCGGGTCATGTTCCGGGTCAGTATTGGATTCCTTCTCCTTCTCAGATCCTAATCGGGCCCACCCAGTTCTCTTGCTCTGTCTGCAACAAGACCTTCAACCGTTTCAACAACATGCAGATGCATATGTGGGGACATGGATCGCAGTATAGGAAAGGCCCAGAATCTCTGAGAGGGGCCAGGCCAGCGTCTTCGATTCTGAGACTTCCATGTTATTGTTGCGCCGAAGGTTGCCGGAACAACATCCAGCATCCGAGGTCGAGGCCATTGAAGGATTTCAGAACCCTTCAGACACACTACAAGCGGAAGCACGGAGCGAAGCCGTTCGGCTGCCGGAAGTGCGGCAAGGCGTTCGCCGTGAGAGGGGATTGGAGGACTCACGAGAAGAACTGCGGCAGGCTCTGGTTCTGTATCTGTGGCTCCGATTTCAAGCACAAGAGATCCCTCAAAGACCATGTACGGGCCTTCGGCGACGGCCACGCTGCTCACACCGTCGACAGCCGCGATCACCACCACCAAGAAGAAGTCGACGACGAAGACGAAGACGAGGAAGAAGACGATGATAATAACAGTGACGTGTTCAAGAGAGAGAGAGAGGAGAAGGAGACAAACAATGAAATGAAAGGGAGAATTTGTATCAAGTCTTAA 999 0.5075 MQTHQYSNFSYLSSTCLEATDEQLLDDEHSISLSLGPPGQHHHLTNNTYSKLMNPTTATTSSSSNDVVSLHHHPHLLHHHQNPNSDVGVTVALHIGLPASNNNAAGSSGKPDPLMSSSSGHVPGQYWIPSPSQILIGPTQFSCSVCNKTFNRFNNMQMHMWGHGSQYRKGPESLRGARPASSILRLPCYCCAEGCRNNIQHPRSRPLKDFRTLQTHYKRKHGAKPFGCRKCGKAFAVRGDWRTHEKNCGRLWFCICGSDFKHKRSLKDHVRAFGDGHAAHTVDSRDHHHQEEVDDEDEDEEEDDDNNSDVFKREREEKETNNEMKGRICIKS 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2651g00002 332 FunFam Zinc finger protein WIP2 195 277 - -
Pral2651g00002 332 PANTHER ZINC FINGER PROTEIN WIP2 44 300 IPR043584 GO:0003700|GO:0010468
Pral2651g00002 332 SUPERFAMILY beta-beta-alpha zinc fingers 211 246 IPR036236 -
Pral2651g00002 332 ProSiteProfiles Zinc finger C2H2 type domain profile. 226 246 IPR013087 -
Pral2651g00002 332 SUPERFAMILY beta-beta-alpha zinc fingers 127 162 IPR036236 -
Pral2651g00002 332 Gene3D Classic Zinc Finger 185 273 - -
Pral2651g00002 332 MobiDBLite consensus disorder prediction 293 307 - -
Pral2651g00002 332 ProSiteProfiles Zinc finger C2H2 type domain profile. 141 168 IPR013087 -
Pral2651g00002 332 ProSitePatterns Zinc finger C2H2 type domain signature. 143 163 IPR013087 -
Pral2651g00002 332 MobiDBLite consensus disorder prediction 308 326 - -
Pral2651g00002 332 SMART c2h2final6 226 246 IPR013087 -
Pral2651g00002 332 SMART c2h2final6 141 163 IPR013087 -
Pral2651g00002 332 SMART c2h2final6 189 221 IPR013087 -
Pral2651g00002 332 MobiDBLite consensus disorder prediction 279 332 - -
Pral2651g00002 332 MobiDBLite consensus disorder prediction 30 67 - -
Pral2651g00002 332 Gene3D Classic Zinc Finger 140 163 - -
Pral2651g00002 332 MobiDBLite consensus disorder prediction 39 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2651g00002 Pral-Chr2651 39911 42269 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2651g00002 27 299 C2H2 Transcription Factor Family AT1G13290 66.909 9.72e-118 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral2651g00002 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2651g00002 - - aprc:113870355 409.838