Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2650g00004 ATGGCCACTGTGGGTTCTTCTTCCTCGTCAAAGGTCTGCTACAATTCCGAGTGTAAAGAATTGAAGTCAGACAGACCTAAGAAGGGTTGGAGACTCCGTACTGGAGACTTCGCTGAGCTCTGTGATCGATGCGGTTCTGCTTTTGAGGAAGGAAGGTTCTGTGACATTTATCATTCAAAAGCTTCTGGTTGGAGGACTTGTGAGACATGTGGGAAGGGGATTCACTGTGGGTGTATCGTTTCAAGTACAGCCTTTATGATGTTGGATCCTGGAGGCATTGAATGCATTGCATGTGCCAGGAAGAGTATTATTTTGCCACCTAGTCTACCTTGGTCACCACCTTTTTCTCTTCAAAGTCGTTTTAGAGACCTGTCTTCAAAAAATTGGAGTCAGTTAGCTGGATCTGGTCCTGTACCATGGAAGCAAGCTCCCAGTTTGTTCAATACAAATTCTTCATCTGACCGGCACCCGGATATGCCATCTGTAGTTGAAATATCTAGTGTTGACAATATTTATGGAAATGAGAGGATATCTGCCTCATCTCTGGAAAAGAAAAGTGACGATCTTTCTGGAATACCAGCTAATTGGAATGTAAAGATTGGCACACGGGAAATGATGTTTATAAATGGAATGCGGAATGATGAAAAGTCTAGTTCATGCTTGAATATGTGCCAGCAAACTTCTCTGAAGGAGGATTCATCAACCCAACCATTTGGTCTGACTGTACCTTATGCACATCAAAATGAAAGAAATGGTCAAATTGGGGTAACTGGAAGTCATCCACAACAAACTCCTCCACCTCCCCATGGAAAGCAATTTAGTGGCCCTGTACACGTTGCACTTGATTCATCAGGTGAATCACAGGCACGAAATGGACGGCCCAGAGGAGACGCCCGAGGAAGGAACCAGCTATTGCCCCGGTACTGGCCCCGGTGCACTGATCAGGAGCTACACCAGATATCTCTCGACTCTAATTCTGTTATAACTCCATTGTTCCAAAAAACGTTGAGTGCTAGTGATGCTGGGCGAATTGGGCGTCTAGTGCTACCAAAAAAATGTGCTGAGGCCTACTTTCCACAAATTTCTCAGCCTGAAGGGTTGCCACTTAAAATCCTTGATGCAAAAGGCAAGGAATGGATATTTCAATTTCGCTTTTGGCCCAACAATAACAGTAGAATGTATGTTTTAGAAGGCGTAACTCCATGCATACAGTCCATGCAATTGCAAGCTGGTGACACAGTAACATTTAGTCGGTTGGAGCCAGAGGGGAGGTTGGTCATGGGATTTCGAAAGGCTTCAAGTGCTACCCAATCTGATCAGGACAACGAAACAACCAAGACTGGAAATGGATATTCTACACACGGTGATGTTAGTAGTGCAAAATTAATCTTGAT 1394 0.4426 MATVGSSSSSKVCYNSECKELKSDRPKKGWRLRTGDFAELCDRCGSAFEEGRFCDIYHSKASGWRTCETCGKGIHCGCIVSSTAFMMLDPGGIECIACARKSIILPPSLPWSPPFSLQSRFRDLSSKNWSQLAGSGPVPWKQAPSLFNTNSSSDRHPDMPSVVEISSVDNIYGNERISASSLEKKSDDLSGIPANWNVKIGTREMMFINGMRNDEKSSSCLNMCQQTSLKEDSSTQPFGLTVPYAHQNERNGQIGVTGSHPQQTPPPPHGKQFSGPVHVALDSSGESQARNGRPRGDARGRNQLLPRYWPRCTDQELHQISLDSNSVITPLFQKTLSASDAGRIGRLVLPKKCAEAYFPQISQPEGLPLKILDAKGKEWIFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRLEPEGRLVMGFRKASSATQSDQDNETTKTGNGYSTHGDVSSAKLIL 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2650g00004 464 MobiDBLite consensus disorder prediction 430 464 - -
Pral2650g00004 464 SMART B3_2 332 433 IPR003340 GO:0003677
Pral2650g00004 464 CDD B3_DNA 330 431 IPR003340 GO:0003677
Pral2650g00004 464 Gene3D - 310 437 IPR015300 -
Pral2650g00004 464 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 10 460 - -
Pral2650g00004 464 MobiDBLite consensus disorder prediction 251 279 - -
Pral2650g00004 464 MobiDBLite consensus disorder prediction 431 456 - -
Pral2650g00004 464 ProSiteProfiles B3 DNA-binding domain profile. 332 433 IPR003340 GO:0003677
Pral2650g00004 464 FunFam B3 domain-containing transcription repressor VAL1 310 437 - -
Pral2650g00004 464 Pfam B3 DNA binding domain 332 431 IPR003340 GO:0003677
Pral2650g00004 464 SUPERFAMILY DNA-binding pseudobarrel domain 329 432 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2650g00004 Pral-Chr2650 33638 44642 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2650g00004 10 440 B3 DNA Binding Superfamily AT4G21550 43.875 1.52e-112 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pral2650g00004 B3 2e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2650g00004 K09287 - gmx:100782114 756.903