Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2646g00006 ATGGAGGAAAACCCTAGTTCTTCATCCAGAACTACTGACAGAAAATTAATCGAGAGGAATCGGAGATATCAAATGAAGGCTCTCTACTCAAAGCTCAACTCGCTTGTGCCTCATCAAAGTCCAAGGGAGGCTATTCCATTACCGGATCAGTTAGAGGAAGCCACCAGTTACATAAAGAAGTTACAGATGAAGTTGGAGAAAATGAAGGAGAAGAAGGACAGCCTAATTGCCACTAATAATCAAAGGTCGAACTTCATCCAACGTAGAGAAATGATTAAGCGATCAAAATCATCGCCACGGTTTGAGATCCTAGAAGTGGGCACTATTGCCTTACAAGTTGTTCTGAGAACTGAATCGGACAGTGAGTTTTCGTTAACTGACATCATTCGACTTCTTCATGAAGAAGGAGTAGATATTGTTACTGCCAATTACACAGTTGTTGAAGATGTAGTTATTCATACGATACACTGTGAGGTAGAGGAATCCGTCAACGTTGCTGCAATGATATCTGAGAGATTAAAGAGATTGTAG 531 0.4068 MEENPSSSSRTTDRKLIERNRRYQMKALYSKLNSLVPHQSPREAIPLPDQLEEATSYIKKLQMKLEKMKEKKDSLIATNNQRSNFIQRREMIKRSKSSPRFEILEVGTIALQVVLRTESDSEFSLTDIIRLLHEEGVDIVTANYTVVEDVVIHTIHCEVEESVNVAAMISERLKRL 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2646g00006 176 Pfam Helix-loop-helix DNA-binding domain 13 62 IPR011598 GO:0046983
Pral2646g00006 176 SMART finulus 15 67 IPR011598 GO:0046983
Pral2646g00006 176 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 10 175 - -
Pral2646g00006 176 Gene3D - 2 93 IPR036638 GO:0046983
Pral2646g00006 176 Coils Coil 51 78 - -
Pral2646g00006 176 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 9 61 IPR011598 GO:0046983
Pral2646g00006 176 FunFam Transcription factor bHLH162 1 87 - -
Pral2646g00006 176 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 7 79 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2646g00006 Pral-Chr2646 86067 87948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2646g00006 6 176 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 43.017 1.07e-41 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral2646g00006 HLH 1.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2646g00006 - - gmx:100784418 179.874