Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2645g00004 ATGACGAGAAGGAAGATAGCAATAAAGAAGATCGAGAACGTAGCTGCGAGGCAGGTGGCTTTCTCAAAGAGAAGGAAAGGTCTATTCAAGAAGGCTATGGAGCTGTCAACTCTCTGTGATGCTGAGATTGCTCTCTTAGTATTTTCAGCTTCGGGCAAACTCTTTGATTATGCTAGTACAAGCATGAGGCAAGTAATTGAAAGGAGAAACCTATACTCAGATGTGAACCCTGTGAAGTCATACCAGCCACCTCAAGAGCTACAGGTTGAAGGTGAATATTTTAAGCTAAACAAGGAAGTAAAAGAGAAGACTCTTGAAATAAGACAGCTCAACGGAGAAGATCTGCAAGGGCTGTCTGTAAAAGATCTGAGGAAGCTAGAAGATTTACTTAGCACAAGCTTGCATCGCATTTCAAAAGCAAAGGTTAAAGTATTTGAGCAGGAGATCAATATTCTAAAGAAAAAGGAAGACGAACTCAAGGAAGAAAACCAGAGGCTAACGAAGGTTGTCAGATTCTTGTCACTAATTCTCAATTAA 537 0.4041 MTRRKIAIKKIENVAARQVAFSKRRKGLFKKAMELSTLCDAEIALLVFSASGKLFDYASTSMRQVIERRNLYSDVNPVKSYQPPQELQVEGEYFKLNKEVKEKTLEIRQLNGEDLQGLSVKDLRKLEDLLSTSLHRISKAKVKVFEQEINILKKKEDELKEENQRLTKVVRFLSLILN 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2645g00004 178 Coils Coil 93 113 - -
Pral2645g00004 178 CDD MADS_MEF2_like 3 74 IPR033896 GO:0000977|GO:0045944
Pral2645g00004 178 Gene3D - 13 77 IPR036879 GO:0003677|GO:0046983
Pral2645g00004 178 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 152 - -
Pral2645g00004 178 ProSiteProfiles K-box domain profile. 86 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral2645g00004 178 SUPERFAMILY SRF-like 2 82 IPR036879 GO:0003677|GO:0046983
Pral2645g00004 178 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral2645g00004 178 Coils Coil 142 169 - -
Pral2645g00004 178 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral2645g00004 178 Pfam K-box region 86 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral2645g00004 178 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral2645g00004 178 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral2645g00004 178 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral2645g00004 178 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2645g00004 Pral-Chr2645 60063 68808 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2645g00004 1 166 MADS-box Gene Family AT2G22540 49.405 8.53e-49 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral2645g00004 K-box 1.9e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2645g00004 - - pcin:129285682 231.106