Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2645g00003 ATGATTCTGAGAAGGAGAAGGGAAATGACGAGAAGGAAGATACAGATAAAGAAAATTGACAGTATAACAGCAAGACAAGTGACTTTCTCAAAGAGAAGGAAAGGTCTCTTCAAGAAGGCACATGAACTCTCGACTCTTTGTGATGCTGAGATTGCCCTCTTAGTCTTCTCGTCTACTGGCAAGCTCTTTGATTATGCTAGCTCAAGTACTTCTGTTTCTCGGGTAATTGAAAGGTACGATCAACATTCTACTGTTCAAAGACTAGGCCAATCATCTGCTGATCTGCAGAATATGTACAAGCTTGGAGGTGATGAGAATAAGCTGCACAAGGTAGTAGCAGAAAGGACTCGTGGATTGAGGCAATTGAATGGGGAAGAACTTCAAGAATGCACACTTGAAGAATTGCAGAAACTAGAGGAAAGACTTCAAAGAGGCTTGTCCCACGTTTCAAAAACAAAGCTATAA 465 0.4108 MILRRRREMTRRKIQIKKIDSITARQVTFSKRRKGLFKKAHELSTLCDAEIALLVFSSTGKLFDYASSSTSVSRVIERYDQHSTVQRLGQSSADLQNMYKLGGDENKLHKVVAERTRGLRQLNGEELQECTLEELQKLEERLQRGLSHVSKTKL 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2645g00003 154 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Pral2645g00003 154 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Pral2645g00003 154 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Pral2645g00003 154 ProSitePatterns MADS-box domain signature. 11 65 IPR002100 GO:0003677|GO:0046983
Pral2645g00003 154 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Pral2645g00003 154 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Pral2645g00003 154 SUPERFAMILY SRF-like 10 89 IPR036879 GO:0003677|GO:0046983
Pral2645g00003 154 Pfam K-box region 106 153 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral2645g00003 154 Gene3D - 22 94 IPR036879 GO:0003677|GO:0046983
Pral2645g00003 154 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Pral2645g00003 154 CDD MADS_MEF2_like 13 83 IPR033896 GO:0000977|GO:0045944
Pral2645g00003 154 PANTHER SERUM RESPONSE FACTOR HOMOLOG 11 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2645g00003 Pral-Chr2645 51918 54669 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2645g00003 9 153 MADS-box Gene Family AT2G22540 53.425 3.39e-44 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral2645g00003 K-box 1.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2645g00003 - - pcin:129285971 172.555