Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2645g00002 ATGACGAGAAGGAAGATAGCAATAAAGAAGATCGAGAACGTAGCTGCGAGGCAGGTGGCTTTCTCAAAGAGAAGGAAAGGTCTATTCAAGAAGGCTATGGAGCTGTCAACTCTCTGTGATGCTGAGATTGCTCTCTTAGTATTTTCAGCTTCGGGCAAACTCTTTGATTATGCTAGTACAAGCACGAGGCAAGTAATTGAAAGGAGAAACCTATACTCAGATGTGAACCTTGTGAAGTCATACCAGCCATCTCAAGAGCTACAGGTTGAAGGTGAATATTTTAAGCTAAACAAGGAAATAGAAGAGAAGACTCTTGAAATAAGACAGCTCAATGGGGAAGATCTACAAGGGCTGTCTGTAAAAGATCTGAGGAAGCTAGAAGATTTACTTAGCACAAGCTTGCATCGCGTTTCAAAAGCAAAGGTCAAAGTATTTGAGCAGGAGATCAGTGTTCTAAAGAAAAAGGAAGACGGACTCAAGGAAGAAAACCAGAGGCTAAAGAAGGTTGTCAGATTCTTGTCACTAATTCTCTTGTTCACCAAATCCATGGAAGAAAACCAGAGATTAGATCAGGCCCGATGGCTTGAGGATGAACAAGATCAGCCATCAGACGCGCCTCCCACAACAAGGTTACTGTTTCCTGAATGA 648 0.4228 MTRRKIAIKKIENVAARQVAFSKRRKGLFKKAMELSTLCDAEIALLVFSASGKLFDYASTSTRQVIERRNLYSDVNLVKSYQPSQELQVEGEYFKLNKEIEEKTLEIRQLNGEDLQGLSVKDLRKLEDLLSTSLHRVSKAKVKVFEQEISVLKKKEDGLKEENQRLKKVVRFLSLILLFTKSMEENQRLDQARWLEDEQDQPSDAPPTTRLLFPE 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2645g00002 215 Coils Coil 93 113 - -
Pral2645g00002 215 SUPERFAMILY SRF-like 2 83 IPR036879 GO:0003677|GO:0046983
Pral2645g00002 215 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 175 - -
Pral2645g00002 215 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral2645g00002 215 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral2645g00002 215 ProSiteProfiles K-box domain profile. 86 189 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral2645g00002 215 CDD MADS_MEF2_like 3 74 IPR033896 GO:0000977|GO:0045944
Pral2645g00002 215 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral2645g00002 215 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral2645g00002 215 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral2645g00002 215 MobiDBLite consensus disorder prediction 193 215 - -
Pral2645g00002 215 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Pral2645g00002 215 Pfam K-box region 85 168 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral2645g00002 215 Coils Coil 142 169 - -
Pral2645g00002 215 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2645g00002 Pral-Chr2645 33246 42161 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2645g00002 1 189 MADS-box Gene Family AT2G22540 48.691 2.90e-50 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral2645g00002 K-box 5.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2645g00002 - - pcin:129285682 257.684