Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pral2637g00060 | ATGGGAGGTGACAGTGCCGTTGACGATGCCACCGCCACCCAGTGCAAGGGCGGTGATGGAGTGAATATCAACGTTCGATGCTCCAATGGTTCAAAATTCTCGGTTCAGATTAGCCTCGAATCCACCGTCGGATTGTTCAAGGAACTTGTCGCTCGGAATTGCGATATCCCCGCCGATCAACAGCGGCTGATTTACAAGGGTCGGATCTTAAAGGACGATCAAATTCTGCAAAGCTACGGTTTAGAGGCAGATCACACTGTTCATTTGGTTCGTGGCTTTGCCCCTGCTGCTGCAGCCAATTCAGCTGGTGGGACCAACACCAGTGCTACAAATACCACAACAAATAATGCAAGAGGTGCTGCTAATGAAGGTGCGGGTGGGGGTCTTGGAGGCTCTGGTTTTGGGGATTCACTGTTTCCTGGACTAGGCATCAATGGGCTTGGGGGAAGTGGCGTCAATGGCTTGTTTGGAGCTGGCCTTCTGGATCCTGAACAAATGCAGCAATCATTTATTTCTAATCCCAATATGATGAGAGAAATGATGAACACACCTGCTATACAGAATCTACTGAATAATCCTGAAATAATGCGGAGTTTTATTATGAGCAATCCACAATTACGAGAGCTTATGGACCGAAATCCTGAACTGGCACACATACTCAATGATCCAGCCACTCTCCGTCAAACACTTGAAGCTACAAGAAACCCTGAGATCATGCGTGAAATGATGAGAAATACAGACAGAGCAATGAGCAATATTGAATCTTCTCCTGAGGGATTCAACATGCTGAGACGCATGTATGAAAATGTTCAAGAGCCATTCTTAGATGCCACAACAATGGCTGGTAATACTGGAAATGACAACTCTAACCCATTTGCTGCGCTTTTGGGCACTCAAGGTGGACAAGCCAGGGACCGATCCACTAATCCTTCAACTACCGGTGCTGAAGCTGCAGCTGGCTCTCCCTCCCCTAATACTAACCCACTTCCTAATCCTTGGACCTCTACTGGATCTGGAGGTGCTCAAAATAACACTGGAGGGACAACTGGTGGGGAAACTAGGCAGCAGGCTCCCGCTGGTTTAGGAGGATTGGGGTTGCAGGATTATCAAGGTCTGCTAGGTGCTATGCCTGATCCCGCCTCATTGACCCAGTTAATGCAAAATCCAGCTATTTCACAAATGATGCAAAGTATCCTTTCCAACCCACAGGCTATGAACCAGATTCTTGGTGTCAATCCTGACCAACGTGGCTTACCAGATCTAAATTCTCATCTTAGAGAAGTGATGCAAAATCCTGAGTTCCTTCGCTTGTTGTCTTCACCTGAGACAATGCAGCAACTCTTGTCTTTTCAGCAAGCTCTTCTTTCACAGCTTGGTCGGTCACCGTCAACACAGGAATCAGGTCAGACTGGCGGAGGCACTGGAACGATGAATAACTCGGGGTTGGAGATGTTGATGAACATGTTTGGTGGACTGGGCGCTGGTAGCCTTGCTGTTCCAAACAGATCAAATGAGCCACCGGAGCAAATGTATGCCACCCAGTTGTCACAGCTTCAAGAGATGGGCTTCTTTGATACGCAAGAGAACATTCGAGCGCTCATCGCCACTCAAGGGAATGTTCATGCAGCAGTTGAACGGCTTCTGGGCAACTCTGGCCAGTAG | 1662 | 0.4813 | MGGDSAVDDATATQCKGGDGVNINVRCSNGSKFSVQISLESTVGLFKELVARNCDIPADQQRLIYKGRILKDDQILQSYGLEADHTVHLVRGFAPAAAANSAGGTNTSATNTTTNNARGAANEGAGGGLGGSGFGDSLFPGLGINGLGGSGVNGLFGAGLLDPEQMQQSFISNPNMMREMMNTPAIQNLLNNPEIMRSFIMSNPQLRELMDRNPELAHILNDPATLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLDATTMAGNTGNDNSNPFAALLGTQGGQARDRSTNPSTTGAEAAAGSPSPNTNPLPNPWTSTGSGGAQNNTGGTTGGETRQQAPAGLGGLGLQDYQGLLGAMPDPASLTQLMQNPAISQMMQSILSNPQAMNQILGVNPDQRGLPDLNSHLREVMQNPEFLRLLSSPETMQQLLSFQQALLSQLGRSPSTQESGQTGGGTGTMNNSGLEMLMNMFGGLGAGSLAVPNRSNEPPEQMYATQLSQLQEMGFFDTQENIRALIATQGNVHAAVERLLGNSGQ | 553 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pral2637g00060 | 553 | Pfam | UBA/TS-N domain | 511 | 547 | IPR015940 | - | |
| Pral2637g00060 | 553 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 505 | 550 | IPR015940 | - | |
| Pral2637g00060 | 553 | MobiDBLite | consensus disorder prediction | 278 | 363 | - | - | |
| Pral2637g00060 | 553 | SMART | CBM | 370 | 408 | IPR006636 | - | |
| Pral2637g00060 | 553 | SMART | CBM | 412 | 447 | IPR006636 | - | |
| Pral2637g00060 | 553 | SMART | CBM | 153 | 190 | IPR006636 | - | |
| Pral2637g00060 | 553 | SMART | CBM | 203 | 242 | IPR006636 | - | |
| Pral2637g00060 | 553 | FunFam | Ubiquitin domain-containing protein DSK2b | 18 | 105 | - | - | |
| Pral2637g00060 | 553 | MobiDBLite | consensus disorder prediction | 458 | 481 | - | - | |
| Pral2637g00060 | 553 | MobiDBLite | consensus disorder prediction | 99 | 124 | - | - | |
| Pral2637g00060 | 553 | PANTHER | UBIQUILIN | 16 | 548 | IPR015496 | - | |
| Pral2637g00060 | 553 | SMART | ubq_7 | 21 | 92 | IPR000626 | GO:0005515 | |
| Pral2637g00060 | 553 | SUPERFAMILY | Ubiquitin-like | 15 | 108 | IPR029071 | - | |
| Pral2637g00060 | 553 | MobiDBLite | consensus disorder prediction | 100 | 120 | - | - | |
| Pral2637g00060 | 553 | Pfam | Ubiquitin family | 23 | 90 | IPR000626 | GO:0005515 | |
| Pral2637g00060 | 553 | ProSiteProfiles | Ubiquitin domain profile. | 21 | 90 | IPR000626 | GO:0005515 | |
| Pral2637g00060 | 553 | Gene3D | - | 18 | 104 | - | - | |
| Pral2637g00060 | 553 | Gene3D | - | 493 | 553 | - | - | |
| Pral2637g00060 | 553 | SUPERFAMILY | UBA-like | 507 | 549 | IPR009060 | GO:0005515 | |
| Pral2637g00060 | 553 | SMART | uba_6 | 511 | 549 | IPR015940 | - | |
| Pral2637g00060 | 553 | CDD | UBA_PLICs | 511 | 549 | - | - | |
| Pral2637g00060 | 553 | MobiDBLite | consensus disorder prediction | 278 | 355 | - | - | |
| Pral2637g00060 | 553 | CDD | Ubl_Dsk2p_like | 21 | 93 | - | - | |
| Pral2637g00060 | 553 | FunFam | Ubiquitin domain-containing protein DSK2b | 200 | 256 | - | - | |
| Pral2637g00060 | 553 | FunFam | Ubiquitin domain-containing protein DSK2b | 494 | 552 | - | - | |
| Pral2637g00060 | 553 | Gene3D | - | 198 | 256 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pral2637g00060 | Pral-Chr2637 | 248987 | 254934 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pral2637g00060 | 21 | 90 | Cytoplasmic Ribosomal Protein Gene Family | AT3G52590 | 31.429 | 1.14e-06 | 46.2 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pral2637g00060 | K04523 | - | qsa:O6P43_024949 | 701.434 |