Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2637g00059 ATGGGAGGTGACAGTGCCGTTGACGATGCCACCGCCACCCAGTGCAAGGGCGGTGATGGAGTGAATATCAACGTTCGATGCTCCAATGGTTCAAAATTCTCGGTTCAGATTAGCCTCGAATCCACCGTCGGATTGTTCAAGGAACTTGTCGCTCGGAATTGCGATATCCCCGCCGATCAACAGCGGCTGATTTACAAGGGTCGGATCTTAAAGGACGATCAAATTCTGCAAAGCTACGGTTTAGAGGCAGATCACACTGTTCATTTGGTTCGTGGCTTTGCCCCTGCTGCTGCAGCCAATTCAGCTGGTGGGACCAACACCAGTGCTACAAATACCACAACAAATAATGCAAGAGGTGCTGCTAATGAAGGTGCGGGTGGGGGTCTTGGAGGCTCTGGTTTTGGGGATTCACTGTTTCCTGGACTAGGCATCAATGGGCTTGGGGGAAGTGGCGTCAATGGCTTGTTTGGAGCTGGCCTTCTGGATCCTGAACAAATGCAGCAATCATTTATTTCTAATCCCAATATGATGAGAGAAATGATGAACACACCTGCTATACAGAATCTACTGAATAATCCTGAAATAATGCGGAGTTTTATTATGAGCAATCCACAATTACGAGAGCTTATGGACCGAAATCCTGAACTGGCACACATACTCAATGATCCAGCCACTCTCCGTCAAACACTTGAAGCTACAAGAAACCCTGAGATCATGCGTGAAATGATGAGAAATACAGACAGAGCAATGAGCAATATTGAATCTTCTCCTGAGGGATTCAACATGCTGAGACGCATGTATGAAAATGTTCAAGAGCCATTCTTAGATGCCACAACAATGGCTGGTAATACTGGAAATGACAACTCTAACCCATTTGCTGCGCTTTTGGGCACTCAAGGTGGACAAGCCAGGGACCGATCCACTAATCCTTCAACTACCGGTGCTGAAGCTGCAGCTGGCTCTCCCTCCCCTAATACTAACCCACTTCCTAATCCTTGGACCTCTACTGGATCTGGAGGTGCTCAAAATAACACTGGAGGGACAACTGGTGGGGAAACTAGGCAGCAGGCTCCCGCTGGTTTAGGAGGATTGGGGTTGCAGGATTATCAAGGTCTGCTAGGTGCTATGCCTGATCCCGCCTCATTGACCCAGTTAATGCAAAATCCAGCTATTTCACAAATGATGCAAAGTATCCTTTCCAACCCACAGGCTATGAACCAGATTCTTGGTGTCAATCCTGACCAACGTGGCTTACCAGATCTAAATTCTCATCTTAGAGAAGTGATGCAAAATCCTGAGTTCCTTCGCTTGTTGTCTTCACCTGAGACAATGCAGCAACTCTTGTCTTTTCAGCAAGCTCTTCTTTCACAGCTTGGTCGGTCACCGTCAACACAGGAATCAGGAACGATGAATAACTCGGGGTTGGAGATGTTGATGAACATGTTTGGTGGACTGGGCGCTGGTAGCCTTGCTGTTCCAAACAGATCAAATGAGCCACCGGAGCAAATGTATGCCACCCAGTTGTCACAGCTTCAAGAGATGGGCTTCTTTGATACGCAAGAGAACATTCGAGCGCTCATCGCCACTCAAGGGAATGTTCATGCAGCAGTTGAACGGCTTCTGGGCAACTCTGGCCAGTAG 1641 0.479 MGGDSAVDDATATQCKGGDGVNINVRCSNGSKFSVQISLESTVGLFKELVARNCDIPADQQRLIYKGRILKDDQILQSYGLEADHTVHLVRGFAPAAAANSAGGTNTSATNTTTNNARGAANEGAGGGLGGSGFGDSLFPGLGINGLGGSGVNGLFGAGLLDPEQMQQSFISNPNMMREMMNTPAIQNLLNNPEIMRSFIMSNPQLRELMDRNPELAHILNDPATLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLDATTMAGNTGNDNSNPFAALLGTQGGQARDRSTNPSTTGAEAAAGSPSPNTNPLPNPWTSTGSGGAQNNTGGTTGGETRQQAPAGLGGLGLQDYQGLLGAMPDPASLTQLMQNPAISQMMQSILSNPQAMNQILGVNPDQRGLPDLNSHLREVMQNPEFLRLLSSPETMQQLLSFQQALLSQLGRSPSTQESGTMNNSGLEMLMNMFGGLGAGSLAVPNRSNEPPEQMYATQLSQLQEMGFFDTQENIRALIATQGNVHAAVERLLGNSGQ 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2637g00059 546 Gene3D - 18 104 - -
Pral2637g00059 546 SMART uba_6 504 542 IPR015940 -
Pral2637g00059 546 Pfam UBA/TS-N domain 504 540 IPR015940 -
Pral2637g00059 546 MobiDBLite consensus disorder prediction 278 363 - -
Pral2637g00059 546 SMART CBM 370 408 IPR006636 -
Pral2637g00059 546 SMART CBM 412 447 IPR006636 -
Pral2637g00059 546 SMART CBM 153 190 IPR006636 -
Pral2637g00059 546 SMART CBM 203 242 IPR006636 -
Pral2637g00059 546 MobiDBLite consensus disorder prediction 99 124 - -
Pral2637g00059 546 SUPERFAMILY Ubiquitin-like 15 108 IPR029071 -
Pral2637g00059 546 SMART ubq_7 21 92 IPR000626 GO:0005515
Pral2637g00059 546 FunFam Ubiquitin domain-containing protein DSK2b 18 105 - -
Pral2637g00059 546 SUPERFAMILY UBA-like 500 542 IPR009060 GO:0005515
Pral2637g00059 546 MobiDBLite consensus disorder prediction 100 120 - -
Pral2637g00059 546 Pfam Ubiquitin family 23 90 IPR000626 GO:0005515
Pral2637g00059 546 ProSiteProfiles Ubiquitin domain profile. 21 90 IPR000626 GO:0005515
Pral2637g00059 546 CDD UBA_PLICs 504 542 - -
Pral2637g00059 546 Gene3D - 198 256 - -
Pral2637g00059 546 MobiDBLite consensus disorder prediction 278 355 - -
Pral2637g00059 546 CDD Ubl_Dsk2p_like 21 93 - -
Pral2637g00059 546 PANTHER UBIQUILIN 16 541 IPR015496 -
Pral2637g00059 546 Gene3D - 486 546 - -
Pral2637g00059 546 FunFam Ubiquitin domain-containing protein DSK2b 200 256 - -
Pral2637g00059 546 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 498 543 IPR015940 -
Pral2637g00059 546 FunFam Ubiquitin domain-containing protein DSK2b 487 545 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2637g00059 Pral-Chr2637 248987 254935 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2637g00059 21 90 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 31.429 1.18e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2637g00059 K04523 - qsa:O6P43_024949 699.123