Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2626g00003 ATGGCTTCCACTTCTACAAAATCAACCAAAAACCCAGGCAAAGGAAGGCGCAAGATCGAGATCAAGAAAGTGGAGCAAACCAGCAAGCGTTTCGTCACCTTCTCGAAACGCAAGTTGGGTCTTTTCCGCAAAGCCGCCGAGCTATCCCTCCTCTGTAACTCTGAAATCGCCGTCGTAGTGTTCTCTCAGCACGGCAAGGTCTATTCCTCCGGCTTCCCAGACCCCGACTCGGTCATCCGCCGCTACCTCTCCGGCACATTCTCTTCTTCCTCGGACCCCGCGTCGGTTGGTCATGAATGGGAGGAAGAATCGGCGGTATCGTCGCTGAGGCGGGAATACGAGGAGGCAATGAGGGTACTGGATGACGAGAAGAAATCTCTGAACGCAATGGCTGATATTCCCGGGTCGAGTTCTGGTCCCGGGTCTTGGTGGAACCGCTCGGTTGGGGAGATGGGTTTGAAGGAAGTTGTGGAGTTCAAGGAAAGAATTGAACAGCTAAAAAAGAATCTGGTTGCTGCGGTGGAGAATAAGAAGAAGGAGACGGCGGCTTTGCTGGCCAGTTCCTCGTCGGTGCCGCCGCTGCAGACGACGGCCGAGGAGTGTTTGTCCACCTCTCTGATGAATGACGATGTGGTTGCGACTGATCAAGGGTGGGATTGGGATTGGGATTCCTGGAATGACATCACAATCAGTAATGATTCTTCCATGGTTGGAATACTGATCTTGGACAGTCTTATTATTAACGCGTAG 750 0.5253 MASTSTKSTKNPGKGRRKIEIKKVEQTSKRFVTFSKRKLGLFRKAAELSLLCNSEIAVVVFSQHGKVYSSGFPDPDSVIRRYLSGTFSSSSDPASVGHEWEEESAVSSLRREYEEAMRVLDDEKKSLNAMADIPGSSSGPGSWWNRSVGEMGLKEVVEFKERIEQLKKNLVAAVENKKKETAALLASSSSVPPLQTTAEECLSTSLMNDDVVATDQGWDWDWDSWNDITISNDSSMVGILILDSLIINA 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2626g00003 249 SUPERFAMILY SRF-like 15 85 IPR036879 GO:0003677|GO:0046983
Pral2626g00003 249 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 23 69 IPR002100 GO:0003677|GO:0046983
Pral2626g00003 249 MobiDBLite consensus disorder prediction 1 20 - -
Pral2626g00003 249 Coils Coil 156 183 - -
Pral2626g00003 249 PANTHER MADS BOX PROTEIN 16 170 - -
Pral2626g00003 249 PRINTS MADS domain signature 36 51 IPR002100 GO:0003677|GO:0046983
Pral2626g00003 249 PRINTS MADS domain signature 51 72 IPR002100 GO:0003677|GO:0046983
Pral2626g00003 249 PRINTS MADS domain signature 16 36 IPR002100 GO:0003677|GO:0046983
Pral2626g00003 249 SMART madsneu2 14 73 IPR002100 GO:0003677|GO:0046983
Pral2626g00003 249 Coils Coil 106 130 - -
Pral2626g00003 249 Gene3D - 27 89 IPR036879 GO:0003677|GO:0046983
Pral2626g00003 249 ProSiteProfiles MADS-box domain profile. 14 74 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2626g00003 Pral-Chr2626 30498 31247 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2626g00003 14 175 Type I MADS-box Gene Family AT5G60440 38.650 5.98e-27 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pral2626g00003 SRF-TF 4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2626g00003 - - pcin:129319416 299.671