Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2619g00003 ATGAAAACACCAAGTAACGAAACGAAGGGTAGGGCGAAGAAGTCATCGTCACGGGGCCACCACAGGTTCGTTGGCGTTCGTCAGAGGCCGTCCGGAAGATGGGTGGCCGAGATCAAAGACTCACTTCAGAAGGTCAGGCTCTGGCTCGGAACTTTCGACACTGCAGAAGATGCAGCTCGAGCCTATGACTCCGCGGCTCGTGCCTTGCGTGGTGCAAATGCTCGCACCAACTTTGAACTGCCGGATCAATCTGCAGCCTCTGGCTGCGGCGGTTTTAGCTACGCGCCGGAGAACATGGAGCCCTTCTCGTTCGAGGATGTGCCTGAGGCTGGTGCAGATTCAGATGGACTTGTTGGTGCTCTCAGAGCCAAATTGTTTGATGATGGGACAAAGACATCATCGAATCCTACGTCTATTATTGGGTATAATGCGACTTCGAGCTCAACTACACGTAACCATCCAAGCAACACAGAAATATCAATACCCTCAAATCCCCCCAAAGCTAAGAGAGTAATCGTTTCGGATACTGTAGATCCTGGAACGACGACCATGAGGAGCATGAGCTTGGGCTGGTCAAACGATGCAGCATATGGACTGCCATGGCAGTCACAGGAGACGAATCAGGGCTCTGAAAGTGGCTTACTTGCCGATGCTGTTCGTGGAAGCACGGGATCGTGGCCTTTTTCTGGGGTGGCTGAGCCGGAGTCAACCTTTGACCTGACATGTTCAGATCAGGGGTTATCCAACAGTGATAAGAATGGTCAAACGAATGTGGTGAGCTTAGAGGTGAATCAGATTGGTGAAACTTCGTCTGAGTGCTTCTGGTCACCTGAGCAGCAACAGTTCGTGCACTGTGATAACAACAGTTGGTTTAGCCCGGTGGCACTTGGGATCCACTGCTCTATACTTCCGAGCTTGGTTGATTAA 927 0.5146 MKTPSNETKGRAKKSSSRGHHRFVGVRQRPSGRWVAEIKDSLQKVRLWLGTFDTAEDAARAYDSAARALRGANARTNFELPDQSAASGCGGFSYAPENMEPFSFEDVPEAGADSDGLVGALRAKLFDDGTKTSSNPTSIIGYNATSSSTTRNHPSNTEISIPSNPPKAKRVIVSDTVDPGTTTMRSMSLGWSNDAAYGLPWQSQETNQGSESGLLADAVRGSTGSWPFSGVAEPESTFDLTCSDQGLSNSDKNGQTNVVSLEVNQIGETSSECFWSPEQQQFVHCDNNSWFSPVALGIHCSILPSLVD 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2619g00003 308 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Pral2619g00003 308 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
Pral2619g00003 308 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Pral2619g00003 308 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
Pral2619g00003 308 FunFam ethylene-responsive transcription factor RAP2-11 21 80 - -
Pral2619g00003 308 MobiDBLite consensus disorder prediction 137 166 - -
Pral2619g00003 308 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 12 211 - -
Pral2619g00003 308 MobiDBLite consensus disorder prediction 1 28 - -
Pral2619g00003 308 SUPERFAMILY DNA-binding domain 23 79 IPR016177 GO:0003677
Pral2619g00003 308 MobiDBLite consensus disorder prediction 137 163 - -
Pral2619g00003 308 CDD AP2 22 79 IPR001471 GO:0003700|GO:0006355
Pral2619g00003 308 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Pral2619g00003 308 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2619g00003 Pral-Chr2619 13651 14577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2619g00003 3 87 AP2-EREBP Transcription Factor Family AT5G19790 59.770 6.81e-28 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral2619g00003 AP2 2.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2619g00003 - - pcin:129305465 386.726