LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral2618g00005	ATGGCGAGTTTTCTCATACGTAATCACTCGGACGAGCTCCGTTGCATTGCGTCTTCTCCAGATTTCAAGCTTCATTACCCTCTCTTCGTCGATTTCGCAGAGCTGATGGATGATGACCCTCATCTTGCCCACCTCATCTTCACCGAACCCGCTACATATTTACAAATATTCGACCAGGCTGCTGTTTGGGCTCATAAAATCATATTGGGAGATCCGGGAGCAGACAAGAATTGGGTTGAGAAAAAGACGATTCATGTCCGCATCAATACAAGTGGCTCTCCACTTGAATGCCCAGAGTCTTTCCCAAGCATAGGACGTATTAGAGTGAAGCACCGGGGGATTCTTCTAACTTTGAAAGGGACAGTAATCAGGTCAGGAGCAATAAAGATGCATGAAGGAGAGAGGGAGTACATGTGCCTAAAGTGCAAGAAGAGCTTCCTAGTTTATCCAGAGGTGGAAGCACGAAACTCCATAACACTACCTTCAGTTTGCCAAGTTCGGGGGTCTAAGCCCTGCGGAGGAACAAAATTTCAGTATGTAGATAGTACTATAGTATGCCATGATTATCAAGAGATTAAAATCCAAGAAAGCACGCAAGTTCTTGGTGTTGGGGTGATTCCTCGTTCAATTCTTGTCATCTTGCAAGATGACCTTGTTGACATTGTTAAAGCTGGAGATGATGTGATTGTTACTGGGGTGCTAACAGCAAAATGGTCATCAGAAGTCAAAGATGTACGCTGTGACCTTGATCCTGTACTGATAGCCAATCATGTAAGGAGAACAAATGAACTGAAGTCAGAAATTGATATTCCTGATGATGTTGTTATGAAATTCAAACAGTTCTGGATCCATTTTAAGGAATGTCCTTTGAAAGGGAGGAATGCTATTTTACGAGGAATTTGCCCACAAGTATTTGGGCTCTTCACTGTCAAGCTGGCAGTTGCATTAACACTTATTGGAGGTGTGCAACGTGTCCATGCTTCTGGAACGAAGTTACGAGGGGAACCCCACTTACTCTTAGTTGGTGATCCTGGCACAGGGAAATCTCAGTTTTTAAAATTTGCAGCAAAATTGAGCAACAGATCTGTAGTTACCACTGGCATGGGTAGCACCAGTGCTGGATTGACTGTTACTGCAGTGAAGGATGGAGGAGAATGGATGTTGGAAGCTGGAGCCCTTGTTCTGGCAGATGGGGGGTTGTGTTGCATAGATGAATTTGATAGTATGAGGGAACATGACAGAGCAACCATACATGAAGCCATGGAACAGCAGACCATAAGTGTTGCCAAGGCTGGTCTTGTAACGACACTCAGCACTAGAACAACTGTGTTTGGTGCTACTAATCCTAAGGGGCATTATGATCCCGATCAACCTCTATCTGTCAACACAACACTCTCTGGTCCTTTATTAAGCAGGTTTGATATAGTCCTTGTGCTCTTGGATACAAAGAATCCTGAATGGGATGCAGTAGTTTCATCTCATATTCTTAAGGAGGCAGAACCAGATAGAATGAGGCAAGATGAAGATCTAGCAACTAACTGGCCTCTTTCTACGCTCAAGAGGTATATTCACTACGTCAAAGAAACCTTCAAACCAGTCCTTACAAGAGAGGCTGAGACAGTCATCTCCAGTTACTATCAACTGCAACGGAAATCGGGAACTCATAATGCAGCTAGGACAACTGTTCGCATGCTGGAAAGCTTGGTTCGCCTAGCTCAAGCCCATGCAAGGTTGATGTTCAGAAATGAGGTGACTCAATTAGATGCCATCACAGCAATTTTATGCATAGAATCTTCAATGACTACCTCTGCTATAGTGGATTGCATTGGTAATGCTCTGCATTCCAATTTTACCGAAAATCCTGACGAGGAATATACTAAACAGGAGAGGATGATACTAGAAAAATTGGGAATTGATGGATCCTGTGACATTAACATCATAGAAGACTGA	1950	0.4349	MASFLIRNHSDELRCIASSPDFKLHYPLFVDFAELMDDDPHLAHLIFTEPATYLQIFDQAAVWAHKIILGDPGADKNWVEKKTIHVRINTSGSPLECPESFPSIGRIRVKHRGILLTLKGTVIRSGAIKMHEGEREYMCLKCKKSFLVYPEVEARNSITLPSVCQVRGSKPCGGTKFQYVDSTIVCHDYQEIKIQESTQVLGVGVIPRSILVILQDDLVDIVKAGDDVIVTGVLTAKWSSEVKDVRCDLDPVLIANHVRRTNELKSEIDIPDDVVMKFKQFWIHFKECPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQRVHASGTKLRGEPHLLLVGDPGTGKSQFLKFAAKLSNRSVVTTGMGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTTVFGATNPKGHYDPDQPLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILKEAEPDRMRQDEDLATNWPLSTLKRYIHYVKETFKPVLTREAETVISSYYQLQRKSGTHNAARTTVRMLESLVRLAQAHARLMFRNEVTQLDAITAILCIESSMTTSAIVDCIGNALHSNFTENPDEEYTKQERMILEKLGIDGSCDINIIED	649

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral2618g00005	649	Gene3D	-	286	605	IPR027417	-
	Pral2618g00005	649	SMART	mcm	100	601	IPR031327	GO:0003677\|GO:0005524\|GO:0032508
	Pral2618g00005	649	Pfam	MCM AAA-lid domain	518	599	IPR041562	-
	Pral2618g00005	649	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	302	609	IPR027417	-
	Pral2618g00005	649	PANTHER	DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER	28	630	IPR031327	GO:0003677\|GO:0005524\|GO:0032508
	Pral2618g00005	649	SUPERFAMILY	Nucleic acid-binding proteins	25	243	IPR012340	-
	Pral2618g00005	649	Pfam	MCM P-loop domain	294	497	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Pral2618g00005	649	ProSiteProfiles	MCM family domain profile.	292	495	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Pral2618g00005	649	Gene3D	-	131	187	-	-
	Pral2618g00005	649	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	391	405	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Pral2618g00005	649	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	419	432	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Pral2618g00005	649	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	469	477	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Pral2618g00005	649	PRINTS	Mini-chromosome maintenance (MCM) protein family signature	333	348	IPR001208	GO:0003677\|GO:0005524\|GO:0032508
	Pral2618g00005	649	FunFam	Probable DNA helicase MCM9	270	604	-	-
	Pral2618g00005	649	CDD	MCM9	295	599	-	-
	Pral2618g00005	649	Gene3D	-	106	236	IPR012340	-
	Pral2618g00005	649	SMART	AAA_5	334	483	IPR003593	GO:0016887
	Pral2618g00005	649	Pfam	MCM OB domain	106	235	IPR033762	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral2618g00005	Pral-Chr2618	34099	43006	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral2618g00005	1	624	Core DNA Replication Machinery Family	AT2G14050	75.439	0.0	983

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral2618g00005	K10738		-	gmx:100776255	1092.8