Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2616g00020 ATGGTAAAGTCGTCCGATAATGGTTTTGGTTCTGTGGCGCCTTTCCTGAAAAAATGTTATGAGATGGTGGACGATGAGTCGACCGACTCGCTTATATCCTGGAGCAAAAGCAATGACAGTTTTATTATCTGGGACATGACTGAGTTCTCCGTGTGTTTGCTTCCTAAGTATTTCAAGCACAACAATTTCTCCAGTTTCATTAGGCAACTTAATATTTATGGTTTCAGGAAAACTGATACAGATCGCTGGGAATTTGCCAATGATGACTTTATCAGAGGTCAAAAGCATTTCCTGAAGAATATATTGAGAAGAAAACATCCACATGTTGCAGATCAGCGAAAGCCATCACAGCAGCAAGAGAATCGTGATGTGCCTTCTCAAGAAGTTACAAACCATGACCTATGGAAAGAAGTCGAGAATTTGAAAACTGATAAAAATGCACTCACACAGGAGCTGGTTAAACTTGGGCAGCACCAGGAATTATCTAAGAACAAATTGCTCCTCCTGACCAATCGGCTTCAAGGAATGGAGAAGAATCAGCAACAGATGTTATCGTTCTTAGTCATGGCCATGCAAATCCCTGGGTTCATGGTTCAGCTGCTTCAGCCCAAGGAAAAAGGTTGGCGTAAGACTGAGACAAGCAATATGTTGGAGCACAGTGTAGAAGATGTCGCATCTGATGGGATGATAATGAAGTATCAGCCACCCTTGAGTGAAACATTGAAGCCTGTAGTTACATCATCTCGTGTTTCAGATGAGCAACCAGAACCCAATCTCTGTACAGATGGGTTGAAAGATTATTTTATCAATTCTGACTTCTTAAAAGTACTCATGGATGAAAAATTGTGTCAAATAGATAATTCTCCATTTATTCTACCAGATTCACCCGATGATAATGCCTGGGAACAGCTTCTTTTAGGCAGTCCCTTCACTGAAAATGAAGATTCAAATCAGGAAAGTGACAGGCCTACCAACAGTGGAATGGAGATCGAGCCTGCTATATGCGAAACACTGTTTGATAAATTCCAAAATTGTGTTGGGTTGATTCCAGAAGTGGACAAAACTCGGAGGAGTGGATTGGAAGGATCTGCTAATGGTGTTCATTTGGAACAGCAGCAGAGTTTGGAATCTCTAACTGAGGAAATAGAACTTTTGGCTTCTGAGCCAAATGAGAAGTAG 1179 0.4122 MVKSSDNGFGSVAPFLKKCYEMVDDESTDSLISWSKSNDSFIIWDMTEFSVCLLPKYFKHNNFSSFIRQLNIYGFRKTDTDRWEFANDDFIRGQKHFLKNILRRKHPHVADQRKPSQQQENRDVPSQEVTNHDLWKEVENLKTDKNALTQELVKLGQHQELSKNKLLLLTNRLQGMEKNQQQMLSFLVMAMQIPGFMVQLLQPKEKGWRKTETSNMLEHSVEDVASDGMIMKYQPPLSETLKPVVTSSRVSDEQPEPNLCTDGLKDYFINSDFLKVLMDEKLCQIDNSPFILPDSPDDNAWEQLLLGSPFTENEDSNQESDRPTNSGMEIEPAICETLFDKFQNCVGLIPEVDKTRRSGLEGSANGVHLEQQQSLESLTEEIELLASEPNEK 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2616g00020 392 Pfam HSF-type DNA-binding 15 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral2616g00020 392 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 7 233 IPR027725 -
Pral2616g00020 392 MobiDBLite consensus disorder prediction 309 325 - -
Pral2616g00020 392 MobiDBLite consensus disorder prediction 308 327 - -
Pral2616g00020 392 FunFam Heat shock transcription factor 1 9 105 - -
Pral2616g00020 392 Gene3D - 9 105 IPR036388 -
Pral2616g00020 392 SUPERFAMILY "Winged helix" DNA-binding domain 11 104 IPR036390 -
Pral2616g00020 392 Coils Coil 138 158 - -
Pral2616g00020 392 SMART hsfneu3 11 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral2616g00020 392 PRINTS Heat shock factor (HSF) domain signature 15 38 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral2616g00020 392 PRINTS Heat shock factor (HSF) domain signature 53 65 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral2616g00020 392 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pral2616g00020 392 Coils Coil 368 388 - -
Pral2616g00020 392 MobiDBLite consensus disorder prediction 107 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2616g00020 Pral-Chr2616 92961 97296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2616g00020 1 309 HSF AT1G67970 52.215 8.91e-95 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pral2616g00020 HSF_DNA-bind 7.1e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2616g00020 K09419 - qsa:O6P43_025963 475.707