Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2616g00018 ATGGCAGAAGCATGCGGAGGCTGTAAATCCTGGGTCGATGACATTTACTGGACCCATTTCAAATTTACGCATTTTGCCCTGCGTCTCCCTCCTGGTTTTGATCAACACCTTGCACTTCCCAAAACGTTTTCAGATGGCGTGAAAAGGAAATTGCCAGATAATGTGACCCTTAGAGGCCCTGGCGGAGCTCAATGGACTGTCAGATTGTCAACTAGAGATGATATATTGCATTTCACGCATGGTTGGCAGCAATTTGCACAAGATCACTTTTTGGAAGAGAATGATCTTCTGATCTTCAAGTACAATGGTGAATCACAGTTTGATGTTCTAATATTTGACAAGAAGAACTTATGTGAGAGGGTGGCTTCTTATTTTGTCCGGGACAGTGGGCAGACAAATAAGAGAAACACAGATAACTGTTTTGAAGAAGAAAATGTTAATGTCCCTTCTAATATTGATGTCAAAGGGGCTTCGCCTGAGAAATCTGCACATCGTAAAAAGAAAACGGCTCGTAAATCTACTGTGGAACATATCCCTGCCCAGCAATCTAAGCGGAGAGGAAGATCTGCCCCTATGGAATACACACCTCCCCAGCAAACTAATCGGAGACTGAGAGGAAGATCTAGGGGATCTGATGTGCATGCTGGAGAAATTGAATGGGTTCCTGATGCTGAACCTGCATCCATGAGCAGAGATAAGATGGTTGAAATAGTGGATGCTTCAAGCAGAAAGGCCGCCATAGAGGAGGCGAAAAAGAATACCCTCCAGTTGGCTCAAGCAGCATGTACCATGGATGGATTCTATGTAGTCATGCGACCCTCGCATGTATTCCAGAAATTCTATGTGACAATCCCTACGAAGTGGGTGACGCAGCATCTTCCTCCACAATCTGAAGATGTGATATTACGTGTGGGAGAGAGTGAGTGGCTTGCTAAATATGCCTTTGAAGCCAGTCGTCGGAGCGGCGGACTCACCGGCGGGTGGAAACAGTTTGCGCTGGACAATAACCTGCGAGAATTTGATGTTTGTGTGTTTCGCTTAGCAGGTATAGGCAAGAAGCCACTGACCCTTGATGTGAAAATATTCAGGGTTGATGTGGAGTGA 1104 0.4547 MAEACGGCKSWVDDIYWTHFKFTHFALRLPPGFDQHLALPKTFSDGVKRKLPDNVTLRGPGGAQWTVRLSTRDDILHFTHGWQQFAQDHFLEENDLLIFKYNGESQFDVLIFDKKNLCERVASYFVRDSGQTNKRNTDNCFEEENVNVPSNIDVKGASPEKSAHRKKKTARKSTVEHIPAQQSKRRGRSAPMEYTPPQQTNRRLRGRSRGSDVHAGEIEWVPDAEPASMSRDKMVEIVDASSRKAAIEEAKKNTLQLAQAACTMDGFYVVMRPSHVFQKFYVTIPTKWVTQHLPPQSEDVILRVGESEWLAKYAFEASRRSGGLTGGWKQFALDNNLREFDVCVFRLAGIGKKPLTLDVKIFRVDVE 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2616g00018 367 Gene3D - 242 365 IPR015300 -
Pral2616g00018 367 Pfam B3 DNA binding domain 267 363 IPR003340 GO:0003677
Pral2616g00018 367 Pfam B3 DNA binding domain 36 114 IPR003340 GO:0003677
Pral2616g00018 367 SUPERFAMILY DNA-binding pseudobarrel domain 267 356 IPR015300 -
Pral2616g00018 367 MobiDBLite consensus disorder prediction 151 212 - -
Pral2616g00018 367 CDD B3_DNA 267 363 IPR003340 GO:0003677
Pral2616g00018 367 ProSiteProfiles B3 DNA-binding domain profile. 22 115 IPR003340 GO:0003677
Pral2616g00018 367 Gene3D - 18 118 IPR015300 -
Pral2616g00018 367 SUPERFAMILY DNA-binding pseudobarrel domain 21 115 IPR015300 -
Pral2616g00018 367 CDD B3_DNA 32 113 IPR003340 GO:0003677
Pral2616g00018 367 ProSiteProfiles B3 DNA-binding domain profile. 267 365 IPR003340 GO:0003677
Pral2616g00018 367 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 33 365 IPR044837 -
Pral2616g00018 367 SMART B3_2 24 115 IPR003340 GO:0003677
Pral2616g00018 367 SMART B3_2 267 365 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2616g00018 Pral-Chr2616 85037 88883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2616g00018 1 363 REM Transcription Factor Family AT4G33280 34.949 7.26e-72 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pral2616g00018 B3 4.5e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2616g00018 - - pcin:129321207 568.926