Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2605g00001 ATGAAGAGATCACTTGAAAGCTCCGATTCTTTGGGTGCTTTGATGACTATGTGTCCATCCACAGATGAACACAGTCCGAGGAACAATAATCATGTGTATGGGAGGGAGTTCCAAACCATGATGTTGGATGGACTAGACGAGGAAGGGTGTGTGGAAGAATCAGCCCATTTGATGATGTCGGAAAAGAAACGGCGTCTGAGTGTTGATCAAGTCAAGGCTTTAGAGAAGAACTTCGAGGTCGAAAACAAGCTTGAGCCTGAGAGGAAGTTGAAGCTTGCTCAAGAACTTGGGTTACAACCTCGACAAGTGGCAGTTTGGTTCCAAAACCGTCGTGCTCGATGGAAAACCAAGCAATTAGAGAGAGATTACGGCGTTCTCAAAGCCAATTATGAAGCCCTCAAAGTTAACTTCGACACCCTTCAACAGGACAACGAAGCATTGGTCAAAGAGATTAAGGAGTTGAAATCTAGACTAAAAGAGGAGCACACAGAGAGTGATATTTCAGTGAAGGAGGAGATAACGGGGTCTGATTCCGAGGAGAAAAAGGTGGAACGGAGCAACCCACCACCAGCTGAAGCCTCCATTCTTGAATCAGAGTGCAAGGACTTGAATTATGGGTGCTTCAATGGAGTCGGGGCTGCTTCACTCATAGCCCCAGTGGATCATTTCAAAGATGGTGGTTCTGATAGCGACTCTAGCGCAATCTTGAACGAAGATAATAGCCCCAACGCCGCCATTTCGTCGCCCGCAGCTCTTCAGAGCCACCACGTTTTGATGTCTCCGTCGTCGCCGTCGTCCATGAACTGCTTTCAATTCCAGAAAGCATACCAGAGCCAGTATGTTAAGATGGAAGAACACAACTTCTTCAGCGCCGAAGAAGCCTGCAATTTCTTCTCGGAAGAACCAGCACCCACCCTCCAGTGGTACTGTTCTGATCACTGGAGTTAA 948 0.4736 MKRSLESSDSLGALMTMCPSTDEHSPRNNNHVYGREFQTMMLDGLDEEGCVEESAHLMMSEKKRRLSVDQVKALEKNFEVENKLEPERKLKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYEALKVNFDTLQQDNEALVKEIKELKSRLKEEHTESDISVKEEITGSDSEEKKVERSNPPPAEASILESECKDLNYGCFNGVGAASLIAPVDHFKDGGSDSDSSAILNEDNSPNAAISSPAALQSHHVLMSPSSPSSMNCFQFQKAYQSQYVKMEEHNFFSAEEACNFFSEEPAPTLQWYCSDHWS 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2605g00001 315 MobiDBLite consensus disorder prediction 230 246 - -
Pral2605g00001 315 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 41 250 IPR045224 GO:0003700
Pral2605g00001 315 SUPERFAMILY Homeodomain-like 58 119 IPR009057 -
Pral2605g00001 315 MobiDBLite consensus disorder prediction 1 29 - -
Pral2605g00001 315 ProSitePatterns 'Homeobox' domain signature. 92 115 IPR017970 GO:0000981|GO:0006355
Pral2605g00001 315 MobiDBLite consensus disorder prediction 9 29 - -
Pral2605g00001 315 MobiDBLite consensus disorder prediction 159 192 - -
Pral2605g00001 315 Pfam Homeobox associated leucine zipper 117 158 IPR003106 GO:0006355|GO:0043565
Pral2605g00001 315 Gene3D - 59 124 - -
Pral2605g00001 315 SMART HOX_1 60 121 IPR001356 GO:0003677
Pral2605g00001 315 MobiDBLite consensus disorder prediction 159 187 - -
Pral2605g00001 315 CDD homeodomain 62 118 IPR001356 GO:0003677
Pral2605g00001 315 Pfam Homeodomain 62 115 IPR001356 GO:0003677
Pral2605g00001 315 ProSiteProfiles 'Homeobox' domain profile. 57 117 IPR001356 GO:0003677
Pral2605g00001 315 Coils Coil 116 164 - -
Pral2605g00001 315 PRINTS Lambda-repressor HTH signature 88 97 IPR000047 GO:0003677
Pral2605g00001 315 PRINTS Lambda-repressor HTH signature 97 113 IPR000047 GO:0003677
Pral2605g00001 315 MobiDBLite consensus disorder prediction 227 246 - -
Pral2605g00001 315 FunFam Homeobox-leucine zipper protein HAT5 55 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2605g00001 Pral-Chr2605 32827 35009 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2605g00001 1 315 Homeobox Transcription Factor Family AT2G22430 47.647 3.96e-82 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pral2605g00001 Homeodomain 3.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2605g00001 K09338 - qsa:O6P43_030496 439.499