Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2584g00006 ATGCCCCTGCCTTCTGCCCCCACTCCCCTTAACAGACCCTTCCTGCCAGACGATGGAATCATGGAGCTCTTCTGGCAAAACGGCCCCGTCGCTTTGCCCAGCTTAAACCATCGGACTCTTAGAAAACCTCCGCCGCCCAAGCCGTCCGGAGATGTGACTGCTTCCGGGCCGTCTACGGCGACGGAGATTGAGATTGGACCCTCACCCCAAGCGGAAAACTACAGCAACCAACATCTGTTCGTGCAAGAAGACGAAATGGCTTCCTGGCTTCACTGCCCCATCGTCGACGATTCTCCCCTGGATCACAATTTCAGTGCGGACCTCCTCTACTCGCCACACACCGCCGTCAACAACAGTGCCACCATGCAAACCAATGTCAGAGCACCTCAGGTGACGGAGTTCGGGCAGCCTTCGACGTCATTAGCTACTCCTACGCCCCCTATACCTCCGACATGGGGGCCACAGGCTAAGATGCAAGAATCCGAGCACTTCTCGAAACACAATGCGAGAGTTGAATCAGGGCCATCGAGGTCAAGGACCGCGGCTAGGGAATCGACGGTGGTGGATTCATGCGACACTCTTGCAGTCGTGGCGACTCCCAGAGTCTCGGACGCCGTGAGAAGCACGGCGGAGCCAACCAAAGGAGCCGCCTGTCGAGGGAGCATGAGTACTACAGGGATTGCAGGGCCTTCGACTACGACAGCCGGTGGAGGAACGGAGGTGATGGCGTGTGAGATGACGGCAACTTCGTCGCCCGGAGGGTCAACTAGGAGTGCAGAACTGTCTGACAGGTCGCCGGCGGAGGATCGGAAGCGGAAGGGGCGGGAAGCCGATGACTCAGAGTGTCACATCGAGGATTTGGATTACGAATCTGCGGAGGCAAGAAAACAAGCTCGCGGATCGAAATCAACGAAGAGATCCCGTGCTGCGGAGGTCCATAATCTATCGGAGAGGAGACGTCGAGATAGGATTAAGGAAAAGATGAGAGCTTTACAAGAACTTATTCCTCGGTGCAATAAGTCTGACAAAGCTTCAATGCTGGATGAAGCAATTGAATACTTGAAGTCATTGCAGTTACAAGTTCAGGTAGCTTCATCTATGATGTCCATGGGATATGGAATGTTACCCATGATGTACCCAGGAATGCAGCAGTACATGCCAGCAATGGGAATGGGCATGGTGGGCATGGAAATGGGAATGAACAGACCAGTGATGCCGTTTACTAATATCGCGGCCGCCACCGCAGTTCCCGCTTATATGGGACCAAGGTCCTTTTCTGTGCCTCCTCCTTTCCATGTTGCTGCACCTGATTTATCCAGCATGCAAGCAGCAAACAAGCCAGATAACATGCTTCCCTCGCTGACTTCATCTGATCCTATTCACTCACGGATCCCAAACCTCACTCAAGCTTATCACCAATACCTTGGTCCCCACCAGATTCAGTGCCATTTAATGCAGAATCAGACAATGATGCAACAAGATATCGGCAAGCCAGGTACCAGTAGGGCCCGTGAGAATCCAGAAAATCATCAGCCAGGTGAATACTTTGTATTCTTCAAGACTTAG 1566 0.5313 MPLPSAPTPLNRPFLPDDGIMELFWQNGPVALPSLNHRTLRKPPPPKPSGDVTASGPSTATEIEIGPSPQAENYSNQHLFVQEDEMASWLHCPIVDDSPLDHNFSADLLYSPHTAVNNSATMQTNVRAPQVTEFGQPSTSLATPTPPIPPTWGPQAKMQESEHFSKHNARVESGPSRSRTAARESTVVDSCDTLAVVATPRVSDAVRSTAEPTKGAACRGSMSTTGIAGPSTTTAGGGTEVMACEMTATSSPGGSTRSAELSDRSPAEDRKRKGREADDSECHIEDLDYESAEARKQARGSKSTKRSRAAEVHNLSERRRRDRIKEKMRALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQVASSMMSMGYGMLPMMYPGMQQYMPAMGMGMVGMEMGMNRPVMPFTNIAAATAVPAYMGPRSFSVPPPFHVAAPDLSSMQAANKPDNMLPSLTSSDPIHSRIPNLTQAYHQYLGPHQIQCHLMQNQTMMQQDIGKPGTSRARENPENHQPGEYFVFFKT 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2584g00006 521 Coils Coil 314 334 - -
Pral2584g00006 521 MobiDBLite consensus disorder prediction 35 72 - -
Pral2584g00006 521 MobiDBLite consensus disorder prediction 155 185 - -
Pral2584g00006 521 Pfam Helix-loop-helix DNA-binding domain 312 358 IPR011598 GO:0046983
Pral2584g00006 521 MobiDBLite consensus disorder prediction 262 321 - -
Pral2584g00006 521 MobiDBLite consensus disorder prediction 52 72 - -
Pral2584g00006 521 PANTHER TRANSCRIPTION FACTOR PIF3 10 490 IPR044273 GO:0003700|GO:0006355
Pral2584g00006 521 SMART finulus 314 363 IPR011598 GO:0046983
Pral2584g00006 521 MobiDBLite consensus disorder prediction 494 513 - -
Pral2584g00006 521 Gene3D - 303 367 IPR036638 GO:0046983
Pral2584g00006 521 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 308 357 IPR011598 GO:0046983
Pral2584g00006 521 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 311 377 IPR036638 GO:0046983
Pral2584g00006 521 FunFam Basic helix-loop-helix transcription factor 303 366 - -
Pral2584g00006 521 CDD bHLH_AtPIF_like 308 374 IPR047265 -
Pral2584g00006 521 MobiDBLite consensus disorder prediction 218 261 - -
Pral2584g00006 521 MobiDBLite consensus disorder prediction 205 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2584g00006 Pral-Chr2584 22053 25142 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2584g00006 17 363 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 42.192 4.78e-58 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral2584g00006 HLH 2.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2584g00006 - - pcin:129287665 468.774