Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2575g00008 ATGTCATCAGAAGGATTCCAGATCCAAGACAAGAAGAACAGCAGGTGTACTGATGAGGAACAGGTAGCCCAGGACACATCATTGGGATCTTCTCAGACAGGCTCGTCCTTTGATTTGAATGAAGGAGCGAGCATAGAAGACAACAACGAAACAGACGACTGTGATATCATCATGGCTGAGGAGAATGATGATGATGATGATGAGAAAGCAAAGGATAGTAATGAAGAAGGTGCTTCAACTAATTATAGAAGCACATCGAGGGAAGGGAACGGAAAAAGAAGAACGGTGAGACAGTATGTTAGATCAAAGATGCCTCGCCTTCGATGGACTCCTGAACTTCATCTCTCGTTTGTTCAAGCTGTTGAAAGGCTTGGTGGTCAAGAGAGAGCCACACCAAAGTTGGTGCTTCAGCTAATGAATGTGAGAGGGCTTAGCATTGCTCATGTCAAGAGTCACTTGCAGATGTATCGAAGCAAGAAACTTGATGAGGCCGGGCAAGTTGTTGGACGAAGATACAGATCACCATCAACCCAAATGGAAGGTCTTATGTCTCAGATATCGCATTATCATCAGTCTCGAAACGCTCATCACCAATATTTGAAGATGGGAAACGGGGGAATCATCCTGGCCAGTAATAATTGTAATGACCAAACTAGCGTCGTCGGCCCAGGTCTCTATCTGCCCTCCTTCGCCCTATCTTCACGTCCACACACAAAGCCTCCTGATGATTCCTGGCAGCAATCACATCAATGGCACTTGGATCATCAACCTATGAATCTGCAAGAAAAAAGGTGGCCTCCATTAGAGATGATGAACGCTCATCAATGGAAGTTCAGAAGGTTACCCACCAATCATCACGCTGCTTGGAGTAATGCCAGCTCAAAACCAGATCCTCCACATCATTCAAACTTCAACCACTACTCTCACAATCACAGTAACCATTGCAATAACTTTGAAACCCCGTTTCGGATCCAGCTTAACGAAGCGATGCTGCGGGAAGAAAAACAATGGGTGCCTGATGATTTGCAGTTGGAGCTGAGTCTGGGAGGTGGCAAAGACGACATCCAAGAAATTAGCACTGAGCTTTCACTTTCTTAG 1098 0.4545 MSSEGFQIQDKKNSRCTDEEQVAQDTSLGSSQTGSSFDLNEGASIEDNNETDDCDIIMAEENDDDDDEKAKDSNEEGASTNYRSTSREGNGKRRTVRQYVRSKMPRLRWTPELHLSFVQAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDEAGQVVGRRYRSPSTQMEGLMSQISHYHQSRNAHHQYLKMGNGGIILASNNCNDQTSVVGPGLYLPSFALSSRPHTKPPDDSWQQSHQWHLDHQPMNLQEKRWPPLEMMNAHQWKFRRLPTNHHAAWSNASSKPDPPHHSNFNHYSHNHSNHCNNFETPFRIQLNEAMLREEKQWVPDDLQLELSLGGGKDDIQEISTELSLS 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2575g00008 365 MobiDBLite consensus disorder prediction 45 71 - -
Pral2575g00008 365 NCBIfam myb-like DNA-binding domain, SHAQKYF class 105 160 IPR006447 GO:0003677
Pral2575g00008 365 MobiDBLite consensus disorder prediction 20 44 - -
Pral2575g00008 365 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 101 161 IPR017930 -
Pral2575g00008 365 FunFam Myb family transcription factor 103 161 - -
Pral2575g00008 365 SUPERFAMILY Homeodomain-like 103 159 IPR009057 -
Pral2575g00008 365 MobiDBLite consensus disorder prediction 1 98 - -
Pral2575g00008 365 MobiDBLite consensus disorder prediction 287 308 - -
Pral2575g00008 365 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 80 222 IPR046955 GO:0003700
Pral2575g00008 365 Gene3D - 104 161 - -
Pral2575g00008 365 Pfam Myb-like DNA-binding domain 107 157 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2575g00008 Pral-Chr2575 43560 47103 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2575g00008 96 166 G2-like Transcription Factor Family AT2G42660 77.465 1.21e-33 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pral2575g00008 Myb_DNA-binding 7.7e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2575g00008 - - pcin:129307103 400.208