Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2571g00004 ATGACTCCCTTATTAGCCTCTCTGTTGTTATTATTATTGTTACTGATAATCCCGGGCGCAACTGTGGCTGAAGAAGTGGAGCCTTGCACGAGCAGGTCTTGTGGAGGAATCGAGATCAAGTTCCCTTTCGGTCTAAGAGGAGTCAACCAGAGTCGTCGATGTAGCTACCCAAAGTTCAGTGTTTGGTGCAATAATCAGAGCCAGACCATCTTGACGCTGCCAGAATCAGGCGACTTGGTGATCAACGACATCGATTATGCCTCCCAAACCCTTTGGGTCAACGATCCTGGTCAGTGCCTTCCAAGACGGTTCTTGAAGGGTCTCAACCTTTCTTCAGCTTCGCCCTGCCAACTCGATCCTGACCTTTACAATCTCATCAACCTCACCTTTCTTCGTTGCCCTTCCAACTTGACGCAGAGTCTACTCACTTCAGTTCGTTGTCTTAACGATCCTGCTAATTCCTCTTTCGCTGTGACGTACGTTTGGATGCGATCCATTCCTCCGCCTTGGAATGAATCTTGTGAGGTCATTAATTCTTCTGTCCCCTACCCGGTTTCCGCCATAGACCCGTGGTCTTTCTGGGTCGATATCGGCGAGGATTTACAGTTGACGTGGGGCAGGCCACGTTGTGGCCTCTGTGAATCTCGAGGACAAGATTGTGGATTCGCCGAGCGTATGGGGCTCCGAACAGGATGTTTCTCTCGTTCCCAGGAAAGCTCAGGTATTCCAAAAGGCGTAAAATATGGGCTAACGATAGGAGTGGGAATACCCGGAGTCCTGTGTTTAATTGGGCTCGGTTGTATCATATGTGGCAAGATACGACGTCGTCGGAATACGAGGCCCAGCACAGATCTTCCTATCACAGCATTTGCTGTCCAGTCCAGCCCATTTAGAATGGGCCTCGATGGGTCCACAATAGAAAAGTATCCCATGACTCTTCTGGGGGAGAGCAGGCGGCTACCGAAGCCCAATGACAACATTTGCTCAATATGCCTGTCGGAGTATGAGCCCAAGGAGGCCTTGAGAACCATACCCGATTGCAATCACTATTTTCACGCCCACTGTATAGATGAATGGCTCAGGATGAACGCCACGTGTCCCGTTTGCCGGAATTCACCGACATTCACACCTTCTTCTGCTTCTGATTCGGCTTCATCATCTGTGTCCCCTTCTTCCTCCATATCCTCTTCACATTAG 1197 0.4987 MTPLLASLLLLLLLLIIPGATVAEEVEPCTSRSCGGIEIKFPFGLRGVNQSRRCSYPKFSVWCNNQSQTILTLPESGDLVINDIDYASQTLWVNDPGQCLPRRFLKGLNLSSASPCQLDPDLYNLINLTFLRCPSNLTQSLLTSVRCLNDPANSSFAVTYVWMRSIPPPWNESCEVINSSVPYPVSAIDPWSFWVDIGEDLQLTWGRPRCGLCESRGQDCGFAERMGLRTGCFSRSQESSGIPKGVKYGLTIGVGIPGVLCLIGLGCIICGKIRRRRNTRPSTDLPITAFAVQSSPFRMGLDGSTIEKYPMTLLGESRRLPKPNDNICSICLSEYEPKEALRTIPDCNHYFHAHCIDEWLRMNATCPVCRNSPTFTPSSASDSASSSVSPSSSISSSH 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2571g00004 398 CDD RING-H2_EL5-like 327 370 - -
Pral2571g00004 398 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 9 373 IPR046948 -
Pral2571g00004 398 SMART ring_2 328 369 IPR001841 -
Pral2571g00004 398 SUPERFAMILY RING/U-box 322 376 - -
Pral2571g00004 398 ProSiteProfiles Zinc finger RING-type profile. 328 370 IPR001841 -
Pral2571g00004 398 Pfam Wall-associated receptor kinase galacturonan-binding 29 95 IPR025287 GO:0030247
Pral2571g00004 398 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 291 374 IPR013083 -
Pral2571g00004 398 MobiDBLite consensus disorder prediction 375 398 - -
Pral2571g00004 398 Pfam Ring finger domain 327 370 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2571g00004 Pral-Chr2571 24867 27777 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2571g00004 23 374 C3H Transcription Factor Family AT2G25410 33.947 1.33e-53 180