Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2565g00067 ATGAAGATTGAGGTGGGATTAGGAGGTATGTTGTGGAGCGAAGACGAACGAGACATGGTCGCGGCGGTTCTGGGCGCTCGAGCTTTCGATTACCTGGTGAACCACTCGGTTTCGAATGATAATCTGTTAATGGCCGTCGTCACCGACGAGAATCTCCAGAAGAAGCTGTCGGATCTCGTGGAGCGTCCGAACGTATCGAATTTCACCTGGAACTACGCCATTTTCTGGCAAATTTCTCAGTCGAAATCCGGCGAATGGGTCTTAGGTTGGGGCGATGGGTGTTGCAGAGAACCGGATGAAGGAGAAGAAGACGGATTGAAAGGAATTCTGAGCCTTCGCATGGAGGATGAAGTTCAGCAAAGGATGAGGAAGAGAGTGTTACAGAAGCTTCACACAACCTTCGGTGGTTCCGAAGAAGACAGTTACGTATATGGATTAGACCGTGTGACTGATACTGAGTTGTTCTTTCTCGCTTCTATGTACTTCTCTTTCCCTCGTGGCCATGGAGGTCCAGGTAAGTGTCTCGCGTCCGGTAAACATTTATGGCTCACAGATGCACAGAAATCTGCAGTTGATTATTGCGTCAGATCATTCCTGGTTAAATCAGCCGGAATCCAGACCGTCGTTTTGATCCCCACTGATATGGGAGTGGTGGAACTGGGTTCTGCCAAGTTGGTGAAAGAGAACTTAGAATTGTTGCAGGCAATCAAATCGGAGTTTTCCGTTGAATCCGCCAAGTCGTCCATTGCACCACCTCTTCTTCCTCCTCCTCCGGCTCCCGTGACGGCGGAGAAAAGAGATGAACTCACCATCTTCCCGGTCTTAACAGTTTCTGACAAAGCCGAAGTAGTACCGAAGATTTTCGGGCAGGATTTGAACAAGACGAACCCAGTTCGAAGCACCCAATTTAGAGAGAAACTTGCTATTAGGAAAATGGAGGATAGGCCATGGTTAGGAGCATCAGGTCATCATCACTCCAATGGGGTTCATCTTCATCCTCGTAATGGTGTTCATCCTTCAACCTGGACAACGACATCTAACAATGGCGTAAGGCAAACCAGTCCTGTTGAAACTTTTCCTTCTAGATCGTCGACGAGCAATGCGCCCGTTCTGGACCTTGTTAATCAGCCGCAAAGGAAAGCACCAATAATGCAGATTGATTTCTCAGGAGCCACTTCCAGGTCTGCCGTGACTGCCGTGAGACCAAACGGCGGTGAATCAGAGCAATCTGATGCCGATGCTTCATTCAGGGAGGACCTGCCAGGCGGAGCCACCACCGACGAAAGGCGGCCGAGGAAGCGAGGAAGAAAGCCGGCAAACGGCAGGGAAGAACCTCTGAACCATGTGGAAGCTGAGAGGCAAAGGCGTGAGAAGCTGAACCAACGGTTCTATGCTTTAAGAGCTGTGGTGCCTAATATCTCCAAAATGGACAAAGCCTCTTTGCTCGGAGACGCCATTGCTTACATCAACGAGCTTCAGGCAAAACTCAAAGCAATGGAATCTGAGAAAGAGATCAGAATGGGAAGCTGTTCAAGTTCAAGGGATCCATCAATGGAGTCCAACAATCAGCAATCTCCTCCTCCTCAGGTGGAAATCCAAGCTTGTCAGGACGAGGTGGTTGTGAGAGCAATCTCCCCAGTGAATTCCCACCCAGTTTCATCAGTGATCAAAGCTTTGAAAGAAGCACAAGTGAACGTCGTTGATTCAAAACTGGCCGCTGCAAATGAAGCTGTGTTTCATACCTTCGTGATCAAACCTCAAGGACCTGATCAGCAGCTGACAAAGGAGAAGCTGGTTGCTGCATTTTCCCGCCAATCCAATTCTTCATCGCCGCAGCCATTATCATTGACCGGTTAA 1857 0.4911 MKIEVGLGGMLWSEDERDMVAAVLGARAFDYLVNHSVSNDNLLMAVVTDENLQKKLSDLVERPNVSNFTWNYAIFWQISQSKSGEWVLGWGDGCCREPDEGEEDGLKGILSLRMEDEVQQRMRKRVLQKLHTTFGGSEEDSYVYGLDRVTDTELFFLASMYFSFPRGHGGPGKCLASGKHLWLTDAQKSAVDYCVRSFLVKSAGIQTVVLIPTDMGVVELGSAKLVKENLELLQAIKSEFSVESAKSSIAPPLLPPPPAPVTAEKRDELTIFPVLTVSDKAEVVPKIFGQDLNKTNPVRSTQFREKLAIRKMEDRPWLGASGHHHSNGVHLHPRNGVHPSTWTTTSNNGVRQTSPVETFPSRSSTSNAPVLDLVNQPQRKAPIMQIDFSGATSRSAVTAVRPNGGESEQSDADASFREDLPGGATTDERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKAMESEKEIRMGSCSSSRDPSMESNNQQSPPPQVEIQACQDEVVVRAISPVNSHPVSSVIKALKEAQVNVVDSKLAAANEAVFHTFVIKPQGPDQQLTKEKLVAAFSRQSNSSSPQPLSLTG 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2565g00067 618 Pfam Helix-loop-helix DNA-binding domain 447 493 IPR011598 GO:0046983
Pral2565g00067 618 Gene3D - 436 507 IPR036638 GO:0046983
Pral2565g00067 618 SMART finulus 449 498 IPR011598 GO:0046983
Pral2565g00067 618 Coils Coil 482 502 - -
Pral2565g00067 618 MobiDBLite consensus disorder prediction 422 454 - -
Pral2565g00067 618 MobiDBLite consensus disorder prediction 503 529 - -
Pral2565g00067 618 PANTHER MYC 40 601 IPR045084 GO:0003700|GO:0006355
Pral2565g00067 618 MobiDBLite consensus disorder prediction 332 370 - -
Pral2565g00067 618 MobiDBLite consensus disorder prediction 510 529 - -
Pral2565g00067 618 MobiDBLite consensus disorder prediction 392 410 - -
Pral2565g00067 618 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 446 508 IPR036638 GO:0046983
Pral2565g00067 618 CDD bHLH_AtAIB_like 440 505 - -
Pral2565g00067 618 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 52 240 IPR025610 -
Pral2565g00067 618 FunFam Transcription factor bHLH13 436 508 - -
Pral2565g00067 618 MobiDBLite consensus disorder prediction 337 370 - -
Pral2565g00067 618 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 443 492 IPR011598 GO:0046983
Pral2565g00067 618 MobiDBLite consensus disorder prediction 392 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2565g00067 Pral-Chr2565 419035 421771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2565g00067 5 609 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 49.126 0.0 541
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral2565g00067 bHLH-MYC_N 6.4e-55 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2565g00067 - - pcin:129291836 980.704