Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2565g00052 ATGATAATTAAGCGAACTATGAAAATTGAAATGCCGAACCTGAAACGGTGTAAGCTAGAGGAGCAGGATGCCGAGGACTATGGGTGTGGGTTGGTTCCAAAGAAACGGAAGGTTAATGGGTTTTATTCCCTTGGTATGCCGGCCGAGGCTGAAGATTTCAGCAGCGGTTCAGGGTCGTGGTGCAGTGAAGGATCGTATTGGGCTAGTGAGGTTCTATCGAATTCAAATTCTACGCCATTGAATAGTAGAACAGCAATGGAACAAGGCTCTGAAAGGATTCGGCCTCCTCTATTGCGGTCGTCTCGTGGCCGCTCTCAAATGCTTCCGTCGAGGTTCAATGATTCTGTTATCGGTACATGGAAGAATCGGGGAATCAAAGTGGAGGACGCAGACTCCAGCTTTGAAGATGATAATATTCTTGTCGAAGATAGGGCGGGGGTTAGTGGATTGGGATTTGTGAAACAGGAAAAGGGAAATAATTATGGCTCCAAGCCTAAGTATTATTCATATCCCGACATGGAGGAGGAGGAGTCAGGATTCAACGACTCCGGTTTAAGCAATTTTGACCCCCGGAAGCTTACAAATTCTTTTAGTACTACTAGAACATCGATCAATGGAAATCGTTCATCAGCAGTTAAAACCGAGAGTTATACGTCTGGTTTAAGTTTTGAGGGTGTGGACCAAAAGCTTGATCGAAATGCTGCGAAAAGGAAAGATATCTACAAACCGGAGGATTTTGCTTTGGGTGACATAGTTTGGGCAAAATGTGGAAAGAGATATCCAGCTTGGCCTGCTGTAGTGATTGATCCTATCTTGCAAGCTCCAAAGTCCGTTCTGAGCTGTTGTGTCCCTGGTGCAATTTGCGTGATGTTTTTTGGGTATTCAAAGAAGGGAAAGCAAAGGGACTACGCATGGGTGAAGCAGGGAATGATATTCCCCTTCATGGAGTTCATGGACAGATTCCAGGGGCAGACTCGGCTGTACAAGAGCAAACCGAGTGATTTTCAGATGGCACTGGAAGAGGCGTTGTTGGCAGAAGATGGTTTTCTAGATTCACAGTTGGGAGCTGAGCAGATAACTAATGTAGAAGCTCATCCCAATGGGTTTATGGAGGCTACAAGTTTATATGTTGATCCGGATTATGGCTTTCAAGACCAGGATATGAGACCTTGTGCGGGCTGTGGTCTGACTTTGCCCTGCAAAACCATGAAGAAAATTAAGGATTCTAGTTCTTCAGCTCAACTTTATTGCAAACTTTGTGCCAAGTTACGAAAATCAAAACAATATTGTGGCATTTGCAAAAAGATTTGGCACCATTCAGACGGTGGGAATTGGGTGTGTTGTGACGGTTGTAATGTTTGGATTCATGCTGAGTGTGCTAGAATATCCAGTAAACTTTTTAAGGATCTGGAACATACAGATTACTATTGTCCAGATTGCAAAGCAAATTTCAACTGTAAATTTTCAGCATCACAAACATGCAAGCCGATAATCAAATCAACAGAAAGTAGCCAAAAGCCTGTTATGCCTGATAAGGTAACAGTGGTGTGCAATGGCATGGAAGGGGATTACATTCCAAAGCTTCATCTAGTTATGTGCAAGTGTGGCTCATGTGGGGTGCGAAAGCAGACACTCAGTGAATGGGAAAGACATACGGGTTGCAGAGCTAAAAAATGGAAATATAGTGTGAAAGTAAAGAGTACAATGCTTCCTCTGGAAAAATGGATCACAGAAAACAATACACAATGCGGAGTTTCTATGCAGTTAGATCAACAGCAGGTACTTGCCTTTCTGCAAGAGAAGTATGAACCAGTTTATCCGAAGTGGACTACAGAAAGATGTGCCGTCTGTAGATGGGTTGAAGATTGGGATGATAACAAAATTATCATCTGCAACAGGTGCCAAATAGCAGTCCACCAAGAGTGCTATGGAGCAAAGAATGTCAAAGATTTTACTTCTTGGGTCTGTAGAGTGTGCGAGACCCCTGATGTTGAGAGAGAGTGTTGCCTCTGTCCTGTAAAAGGTGGAGCTCTAAAGCCAACTGATGTTGAGATGCTGTGGGTTCATGTCACCTGTGCTTGGTTCCGGCCTGAAGTTGGATTTTCAAACCATGAGACAATGGAACCTGCTTTTGGAATCCTCAAAATTCCTCCAAGTTTGTTTTTGAAGACTTGTGTTATCTGTAAGCAAAGCCATGGATCTTGTGCAAGTTGTTGCAAGTGTGCTACTCATTTTCACGTCATGTGTGCATCTAGGGCCGGATACAGCATGGAATTGCATTCTCTGGAGAAGAATGGAGTTCAGATAACGAAGAAGTTGATATATTGTGCATTTCACAGGCTTCCGACCCCAGATTCTGTAATGGTTATACATACTCCCTTGGGGGTCTTCTCTCCCAGAACTTCCCTGCAGAACCATAAGGGATGCTTCAGGGGATCGAGGCTGGTATCATCCAAAAACGTAGAACTTCTTGAATCTTCAGCCTCCGAGACAAATGAATTTGAACCACTGTCTGCTGCAAGATGTCGTGTTTATAGAAGGTCTTCCAAGAGGGCCGATGAGCCAATAATACATTTAGTGAGGGGACCAAGTCGTCATTTATTAAGTTCGATTATTCAATTGAACAGCTATAAGGACTCAGAAGATTCAAAAGTATTTACTTCATTCAAGGAACGTCTTCACCATTTGCAGAAAACTGAAAATCATCGAGTTTGCTTTGGAAAATCGGGTATACATGGATGGGGCCTCTTTGCTCGTACAGATATACAAGAAGGAGAGATGGTTGCTGAGTACCGTGGTGAGCACGTAAGACGAAGTGTTGCGGATATGAGGGAGGCTAGGTATCGTTCAGAAGGCAAAGACTGTTATCTGTTCAAGATCAGTGAAGAGGTGGTCATTGATGCGACACATAGGGGGAATATAGCCCGCCTGATAAACCACTCTTGCATGCCTAACTGCTATGCTAGGATTATGAGCATGGGTGCCGAGGAGAGCCGGATTGTTCTTATTGCCAAGACTCATGTTTCTGCTGGGGAAGAACTAACGTATGATTACTTGTTTGATCCGGATGAGCGGGATGAACTGAAAGTTCCTTGCCTCTGTAAAGCCCCAAATTGTAGGAAATTTATGAATTAG 3135 0.437 MIIKRTMKIEMPNLKRCKLEEQDAEDYGCGLVPKKRKVNGFYSLGMPAEAEDFSSGSGSWCSEGSYWASEVLSNSNSTPLNSRTAMEQGSERIRPPLLRSSRGRSQMLPSRFNDSVIGTWKNRGIKVEDADSSFEDDNILVEDRAGVSGLGFVKQEKGNNYGSKPKYYSYPDMEEEESGFNDSGLSNFDPRKLTNSFSTTRTSINGNRSSAVKTESYTSGLSFEGVDQKLDRNAAKRKDIYKPEDFALGDIVWAKCGKRYPAWPAVVIDPILQAPKSVLSCCVPGAICVMFFGYSKKGKQRDYAWVKQGMIFPFMEFMDRFQGQTRLYKSKPSDFQMALEEALLAEDGFLDSQLGAEQITNVEAHPNGFMEATSLYVDPDYGFQDQDMRPCAGCGLTLPCKTMKKIKDSSSSAQLYCKLCAKLRKSKQYCGICKKIWHHSDGGNWVCCDGCNVWIHAECARISSKLFKDLEHTDYYCPDCKANFNCKFSASQTCKPIIKSTESSQKPVMPDKVTVVCNGMEGDYIPKLHLVMCKCGSCGVRKQTLSEWERHTGCRAKKWKYSVKVKSTMLPLEKWITENNTQCGVSMQLDQQQVLAFLQEKYEPVYPKWTTERCAVCRWVEDWDDNKIIICNRCQIAVHQECYGAKNVKDFTSWVCRVCETPDVERECCLCPVKGGALKPTDVEMLWVHVTCAWFRPEVGFSNHETMEPAFGILKIPPSLFLKTCVICKQSHGSCASCCKCATHFHVMCASRAGYSMELHSLEKNGVQITKKLIYCAFHRLPTPDSVMVIHTPLGVFSPRTSLQNHKGCFRGSRLVSSKNVELLESSASETNEFEPLSAARCRVYRRSSKRADEPIIHLVRGPSRHLLSSIIQLNSYKDSEDSKVFTSFKERLHHLQKTENHRVCFGKSGIHGWGLFARTDIQEGEMVAEYRGEHVRRSVADMREARYRSEGKDCYLFKISEEVVIDATHRGNIARLINHSCMPNCYARIMSMGAEESRIVLIAKTHVSAGEELTYDYLFDPDERDELKVPCLCKAPNCRKFMN 1044
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2565g00052 1044 SUPERFAMILY Tudor/PWWP/MBT 239 347 - -
Pral2565g00052 1044 Pfam PHD-finger 429 482 IPR019787 -
Pral2565g00052 1044 Pfam PWWP domain 249 344 IPR000313 -
Pral2565g00052 1044 Pfam PHD-finger 626 660 - -
Pral2565g00052 1044 Pfam PHD-zinc-finger like domain 667 779 - -
Pral2565g00052 1044 PANTHER PHD FINGER PROTEINS 13 1021 - -
Pral2565g00052 1044 CDD PHD_TCF19_like 430 480 - -
Pral2565g00052 1044 Gene3D SET domain 872 1044 IPR046341 -
Pral2565g00052 1044 FunFam Histone-lysine N-methyltransferase 876 1044 - -
Pral2565g00052 1044 SUPERFAMILY FYVE/PHD zinc finger 427 488 IPR011011 -
Pral2565g00052 1044 SMART PHD_3 613 660 IPR001965 -
Pral2565g00052 1044 SMART PHD_3 724 780 IPR001965 -
Pral2565g00052 1044 SMART PHD_3 429 481 IPR001965 -
Pral2565g00052 1044 CDD PWWP_AtATX3-like 249 349 - -
Pral2565g00052 1044 SMART set_7 902 1025 IPR001214 GO:0005515
Pral2565g00052 1044 ProSiteProfiles Zinc finger PHD-type profile. 427 483 IPR019787 -
Pral2565g00052 1044 CDD PHD_ATX3_4_5_like 613 659 IPR042011 -
Pral2565g00052 1044 ProSiteProfiles PWWP domain profile. 248 317 IPR000313 -
Pral2565g00052 1044 FunFam Histone-lysine N-methyltransferase 663 782 - -
Pral2565g00052 1044 CDD SET_SETD1-like 891 1040 - -
Pral2565g00052 1044 ProSitePatterns Zinc finger PHD-type signature. 614 659 IPR019786 -
Pral2565g00052 1044 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 421 486 IPR013083 -
Pral2565g00052 1044 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 663 781 IPR013083 -
Pral2565g00052 1044 ProSiteProfiles Post-SET domain profile. 1028 1044 IPR003616 -
Pral2565g00052 1044 Pfam SET domain 913 1018 IPR001214 GO:0005515
Pral2565g00052 1044 SUPERFAMILY FYVE/PHD zinc finger 612 676 IPR011011 -
Pral2565g00052 1044 ProSiteProfiles SET domain profile. 902 1019 IPR001214 GO:0005515
Pral2565g00052 1044 SMART PostSET_3 1028 1044 IPR003616 -
Pral2565g00052 1044 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 609 662 IPR013083 -
Pral2565g00052 1044 SMART PWWP_4 246 315 IPR000313 -
Pral2565g00052 1044 SUPERFAMILY SET domain 895 1041 IPR046341 -
Pral2565g00052 1044 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1044 IPR025780 -
Pral2565g00052 1044 Gene3D - 239 348 - -
Pral2565g00052 1044 CDD ePHD_ATX3_4_5_like 668 779 IPR041955 -
Pral2565g00052 1044 ProSiteProfiles Extended PHD (ePHD) domain profile. 665 780 IPR034732 -
Pral2565g00052 1044 ProSiteProfiles Zinc finger PHD-type profile. 611 662 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2565g00052 Pral-Chr2565 269919 277948 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2565g00052 386 464 EF-hand Containing Proteins AT5G28340 51.807 1.70e-20 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pral2565g00052 zf-HC5HC2H_2 8.5e-28 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2565g00052 - - gmx:100793624 1575.84