LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral2565g00049	ATGGATTCAAAGCGACATAAATTTGTGAGGTTTGATGATCAGAGTTCAGAATCATCATCTAATACTGAGCAGAAAAATTCTAGCAATAATGGATACCATGGAAGAAAACTGAGACCAAGCGTAAGCGCTGCTTTAGATAGTATCAAAAGAAGACTTGAGAATGGGTCTGATAAGATAAAAAATTTCCGAAAATCCTCAACTGTTCATCCTATAAGTGACAGACCGCCCAAGACATCTGCTCCTAGAAGAAAAATTCTTGATCCGCAGGGGTCGTTCCTTCAGAGATGGAACAAAATATTTGTATTCACATCTGTGATGGCTGTCTCTGTGGATCCACTCTTCTTTTACATCCCAGCGGTTGGAGACAAAGGCAAATGCCTTGAGTTGAATGGAAACTTGCAGATTATTGCTTCTGTTCTTCGTACATTCTTCGATCTTTTCTACATTCTTCACATAACCTTTCAGTTTCAAACTGGGTTTATTGCTCCTTCTTCTCGGGTATTTGGAAGGGGCGAGCTCGTTAATGATCCTCGGGCTATCATGAAAAGATACTTATCTACATACTTTATCATCGATGTTCTATCAATTCTTCCACTTCCACAGGTGGTTGTTTTATTTATCATTCCAAAACTGAAGAGCTCAGTTCCATTCGTGGCGAAGGACTTGTTGACGTATATGGTCTTGATCCAGTATGTGCCAAGAGTCTGGCGCATTCGCCCATTATTCAAAGAAGTAACAAGAACTTCTGGCATACTCACAGAAACTGCATGGGCTGGGGCTGCTTATAATCTTTGTCTGTATATGCTGGCAAGTCATTTGGTTGGAGCCTTCTGGTACCTGCTCTCGGTACAATCAGAGCTTCGGTGCTGGCACAGAGCATTGGAAAGTACAAAATATAATGATAATAATTATCTGGGCTGTGGTAACCAGAATGCAACTGTAGTTTCACTTCTCACTGATTCATGTGCCGTTGTTGATCCTTCTGAAATTACCAACTCAACAACCTTCAATTTTGGAATATATGCCGATGCTCTACAATCTGGTGTGGTTAATTCAACAACAGATTTTCCTCAGAAGTTTTTCTACTGCTTCTGGTGGGGTTTGCGCAATTTAAGTTCTCTTGGACAGAACCTTAAGACAAGTACTTATGTCCCGGAGATAATCTTTGCTATCTGCATTGCTGTCTTTGGCTTAGTCCTGTTCTCGTTGCTTATTGGAAACATGCAGAAATATCTGCAATCTACTACAGTTAGAGTTGAGGAGATGAGAGTGAAAAGGAGAGATGCAGAGCAATGGATGTCCCACCGTATGCTTCCAGAGAACTTAAGGGAAAGAATCAGACGGTATGAACATTACAAATGGCAAGAAAATCGGGGTGTTGAAGAAGAAGCATTAATTCGTAATCTTCCTAAAGATCTCAGAAGGGACATAAAGCGTCATCTTTGCTTGGCTTTACTTAAAAAGGTGCCAATATTTGAGAAAATGGATGAACAATTGTTGGATGCAATGTGTGATAGATTGAAGCCAATTCTTTATACAGAGAAGAGTTATATTGTTCGTGAAGGAGATCCGGTCGATGAAATGCTCTTCATTATGCGAGGAAAGCTTGCTACTACGACAACAAATGGAGGAAGAACTGGTTTCTTTAACTCTTCAGTTCTTCAAGCTGGTGACTTCTGTGGAGAAGAGCTTCTAACATGGGCGTTGGACCCCAATACCTCTTCAAATCTTCCCATTTCAACAAGAACAGTGGAATCCATATCAGAAGTTGAAGCTTTTGCTCTCATGCCTGATGACTTGAAGTTTGTTACTTCTCAATTTCGAAGACTTCATAGCAAACGGCTTCAGCACACTTTCAGATTTTATTCCTTGCAATGGAAGACGTGGGGTGCCTGTTTCATACAGGCAGCTTGGCGTCGCTACTGCAGAAAGAAGATGGAGAGGTCATTGCGTGAAGCAGAAGAAAGACTATTGGCCAATGAGAGTGGATCATCATCAACACCAAGTCTTGGTGCCACCATTTATGCATCAAGATTTGCTGCAAATGCCTTACGAAACTTGCGACAGAACAGCGAACACAACAGCAGAATGACACAGAGATTGCTGCCTCTGCTGCCTCAGAAGCCATCTGAGCCAGACTTTACTTCTCAAAGTCACTAG	2160	0.4144	MDSKRHKFVRFDDQSSESSSNTEQKNSSNNGYHGRKLRPSVSAALDSIKRRLENGSDKIKNFRKSSTVHPISDRPPKTSAPRRKILDPQGSFLQRWNKIFVFTSVMAVSVDPLFFYIPAVGDKGKCLELNGNLQIIASVLRTFFDLFYILHITFQFQTGFIAPSSRVFGRGELVNDPRAIMKRYLSTYFIIDVLSILPLPQVVVLFIIPKLKSSVPFVAKDLLTYMVLIQYVPRVWRIRPLFKEVTRTSGILTETAWAGAAYNLCLYMLASHLVGAFWYLLSVQSELRCWHRALESTKYNDNNYLGCGNQNATVVSLLTDSCAVVDPSEITNSTTFNFGIYADALQSGVVNSTTDFPQKFFYCFWWGLRNLSSLGQNLKTSTYVPEIIFAICIAVFGLVLFSLLIGNMQKYLQSTTVRVEEMRVKRRDAEQWMSHRMLPENLRERIRRYEHYKWQENRGVEEEALIRNLPKDLRRDIKRHLCLALLKKVPIFEKMDEQLLDAMCDRLKPILYTEKSYIVREGDPVDEMLFIMRGKLATTTTNGGRTGFFNSSVLQAGDFCGEELLTWALDPNTSSNLPISTRTVESISEVEAFALMPDDLKFVTSQFRRLHSKRLQHTFRFYSLQWKTWGACFIQAAWRRYCRKKMERSLREAEERLLANESGSSSTPSLGATIYASRFAANALRNLRQNSEHNSRMTQRLLPLLPQKPSEPDFTSQSH	719

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral2565g00049	719	FunFam	Cyclic nucleotide-gated ion channel 1	418	482	-	-
	Pral2565g00049	719	Gene3D	-	99	415	-	-
	Pral2565g00049	719	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED	60	714	-	-
	Pral2565g00049	719	SUPERFAMILY	Voltage-gated potassium channels	87	413	-	-
	Pral2565g00049	719	Pfam	Ion transport protein	95	419	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085
	Pral2565g00049	719	CDD	CAP_ED	491	622	IPR000595	-
	Pral2565g00049	719	MobiDBLite	consensus disorder prediction	1	39	-	-
	Pral2565g00049	719	Gene3D	Jelly Rolls	489	609	IPR014710	-
	Pral2565g00049	719	MobiDBLite	consensus disorder prediction	14	35	-	-
	Pral2565g00049	719	SMART	cnmp_10	491	622	IPR000595	-
	Pral2565g00049	719	ProSiteProfiles	cAMP/cGMP binding motif profile.	491	575	IPR000595	-
	Pral2565g00049	719	MobiDBLite	consensus disorder prediction	689	719	-	-
	Pral2565g00049	719	MobiDBLite	consensus disorder prediction	63	84	-	-
	Pral2565g00049	719	FunFam	Cyclic nucleotide-gated ion channel 1	489	607	-	-
	Pral2565g00049	719	Gene3D	Helix hairpin bin	418	482	-	-
	Pral2565g00049	719	Pfam	Cyclic nucleotide-binding domain	512	600	IPR000595	-
	Pral2565g00049	719	SUPERFAMILY	cAMP-binding domain-like	420	613	IPR018490	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral2565g00049	Pral-Chr2565	252198	257557	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral2565g00049	1	716	Ion Channels	AT5G53130	64.917	0.0	928

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral2565g00049	K05391		-	qsa:O6P43_017768	1086.25