LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral2565g00042	ATGCCCACAAAACTCTTATCGCACCTCCATCTTATCCAAGTTTCTTCCTTCGCTCGTCTGCCCTCCATGAAGCTTGGAGTCTCCGTTCCAACGTCTCGAGCGGTCCCCATTTTCTCTCGTATCTTCCCCTTCAGGCTCAAGTACCTGGGCCTGGAATCTCGTGCTGTACGGAACGAACTACTTGGCATACGGCGATTTTCGACCCGGTCGTTTCCTGGGAGGGCTGGGGCGAGGTCCGAGTTCAACCGGGGGAATAGGGATACAGAAAGAATCAGGGTGTCTAAGAGCTTGATTGAGGATGAGGGTGAACTCAGTGACTGGGTTGACGATTTGAAGACCGATTCTTATCGAGGTCGACTCACCAGCGAAGAGGATGACTCGGATAGGGAGACGGGTCGCACTGGAGGGAGGAGTAGAGCATCTTTGTCGATGAAAGGGAGCAGGGAGATTGGGTCGAGCAGATTTGGTGAATCAACTCGGAGGAGAACTCGTGATACATTTGAGTCATTATCTCGAAATTCTCGTATGAACCGGAGATTTGAAGACGAAGACGACAAGGAGGAAACTGAATTCCGCTCTTGGAGACCCGGTAGAGTGTCCGAAGGTCGGAATGCGAAGTCTCTCTTGGGGAAGAGAAGTGGTGAGGAGTTGCGAAGAGGCAGAAGGGATGGAAAGAGAAAATCGTATTCAATGAGTGAGGATGATGCTGACGAAGATGAACAGGGGGCAAAGAATTTCATGGGACGCTTTGGAGATCTTATTAGTGAAGATAGTGACGCTGAAGATACTGCAGATGAATATGATGATGATGATTTACCGAAGAAGACTTCAGATTTTCAGCTGGGTCGGGAAAAGGAGCTGAAGAAGAGCAGTCCAACAAGAGGTTCTCCTGAGAGATCTGACAATTATTTAAGTGAGACCAAATTTGATCAATGTTCAATCTCGCCTTTATCATTGAAAGGAGTCAAGGCTGCTGGATATGAGAAAATGACTATTGTGCAGGAGGCAACTCTTCCAGTAATTCTCCGAGGTAAGGATGTCCTAGCCAAGGCTAAAACAGGCACAGGAAAAACTGTTGCCTTTTTGCTTCCGTCTATTGAAGTCGTCGCAAAGTCACCTCCGGTTGATCGTGATCAAAAGCGACCTCCAATCCTAGTGCTTGTCATATGCCCAACTCGAGAGCTTGCAAGTCAAGCTGCTGCAGAAGCCACTAAACTACTTAAGTACCACCCTTCCATTGGTGTCCAAGTTGTGATTGGAGGGACAAGACTTGCTTTGGAACAGAAACGCATGCAAGCTAACCCTTGCCAGATCCTTGTTGCTACTCCCGGAAGACTTAGGGACCATATTGAGAATACAGCAGGCTTTGCAACTCGGTTGATGGGTGTGAAAGTCCTTGTGCTTGATGAAGCTGATCATCTATTAGATATGGGATTTCGCAAAGACATTGAGAAGATAATTGCTGCAGTTCCTAAACAACGACAGACTCTTATGTTTTCTGCCACCGTTCCAGAAGAGGTCCGCCAAGTCTGCCATATTGCATTGAGAAGGGATCATGAATTTATCAATACAGTTGAAGAGGGTACTGAGGAGACACATTCACAGGTTCAACAGATGCATTTAGTTGCACCATTAGACAAACATTTCTCCTTGCTCTACGTTCTTCTAAAGGAGCATATTGCTGATGATATTGACTATAAGGTTCTTGTTTTCTGCACAACTGCCATGGTCACAAGACTTGTTGCTGACCTTCTTGGTGAGTTAAACTTGAATGTGAGAGAGATTCATTCAAGAAAGCCTCAGAGCTATAGGACCAGGGTCTCTGAGGAGTTTCGGAAGTCAAAGGGCCTAATCCTTGTGACTTCTGATGTATCTGCCCGCGGAGTTGATTATCCAGATGTCACTCTGGTTATACAGTTGGGTTTGCCAGCTGTTAGAGAACAGTATATCCACCGACTGGGTCGAACAGGGCGGAAGGGTAAAGAAGGGCAAGGCATATTGTTATTAGGTCCTTGGGAAGAATTCTTTTTATCTACCGTAAAGGATTTGCCTATTACAAAAGCTCCAGTGCCTTCAATTGATCCTGACACAAAGAAAAAGGTGGAAAGGGCCCTATCACACGTGGAGATGAAGAACAAAGAAGCAGCATATCAGGCCTGGCTTGGTTACTATAATTCCAACAAGAAAGTGGGGAAAGACAAGTATAGGCTAGTGGAGCTGGCAAATGAATTCAGTAGAAGCATGGGCCTTGATAACCCTCCAGCTATTCCAAAGCTGGTCCTTGGCAAGATGGGCCTCAGAAATGTACCTGGTTTACGATCCAAATAG	2328	0.4635	MPTKLLSHLHLIQVSSFARLPSMKLGVSVPTSRAVPIFSRIFPFRLKYLGLESRAVRNELLGIRRFSTRSFPGRAGARSEFNRGNRDTERIRVSKSLIEDEGELSDWVDDLKTDSYRGRLTSEEDDSDRETGRTGGRSRASLSMKGSREIGSSRFGESTRRRTRDTFESLSRNSRMNRRFEDEDDKEETEFRSWRPGRVSEGRNAKSLLGKRSGEELRRGRRDGKRKSYSMSEDDADEDEQGAKNFMGRFGDLISEDSDAEDTADEYDDDDLPKKTSDFQLGREKELKKSSPTRGSPERSDNYLSETKFDQCSISPLSLKGVKAAGYEKMTIVQEATLPVILRGKDVLAKAKTGTGKTVAFLLPSIEVVAKSPPVDRDQKRPPILVLVICPTRELASQAAAEATKLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLMFSATVPEEVRQVCHIALRRDHEFINTVEEGTEETHSQVQQMHLVAPLDKHFSLLYVLLKEHIADDIDYKVLVFCTTAMVTRLVADLLGELNLNVREIHSRKPQSYRTRVSEEFRKSKGLILVTSDVSARGVDYPDVTLVIQLGLPAVREQYIHRLGRTGRKGKEGQGILLLGPWEEFFLSTVKDLPITKAPVPSIDPDTKKKVERALSHVEMKNKEAAYQAWLGYYNSNKKVGKDKYRLVELANEFSRSMGLDNPPAIPKLVLGKMGLRNVPGLRSK	775

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral2565g00042	775	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	307	335	IPR014014	GO:0003724
	Pral2565g00042	775	Pfam	Helicase conserved C-terminal domain	556	660	IPR001650	-
	Pral2565g00042	775	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	338	521	IPR014001	-
	Pral2565g00042	775	Pfam	DEAD/DEAH box helicase	333	509	IPR011545	GO:0003676\|GO:0005524
	Pral2565g00042	775	MobiDBLite	consensus disorder prediction	208	233	-	-
	Pral2565g00042	775	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	556	706	IPR001650	-
	Pral2565g00042	775	MobiDBLite	consensus disorder prediction	258	304	-	-
	Pral2565g00042	775	SMART	ultradead3	326	539	IPR014001	-
	Pral2565g00042	775	MobiDBLite	consensus disorder prediction	118	135	-	-
	Pral2565g00042	775	Gene3D	-	530	754	IPR027417	-
	Pral2565g00042	775	MobiDBLite	consensus disorder prediction	118	243	-	-
	Pral2565g00042	775	Gene3D	-	266	522	IPR027417	-
	Pral2565g00042	775	CDD	SF2_C_DEAD	536	669	-	-
	Pral2565g00042	775	CDD	DEADc_MSS116	314	523	-	-
	Pral2565g00042	775	PANTHER	RNA HELICASE	274	704	-	-
	Pral2565g00042	775	SMART	helicmild6	579	660	IPR001650	-
	Pral2565g00042	775	MobiDBLite	consensus disorder prediction	269	304	-	-
	Pral2565g00042	775	MobiDBLite	consensus disorder prediction	154	199	-	-
	Pral2565g00042	775	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	384	676	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral2565g00042	Pral-Chr2565	221883	227078	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral2565g00042	298	688	Eukaryotic Initiation Factors Gene Family	AT3G19760	27.518	1.13e-45	167

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral2565g00042	-		-	qsa:O6P43_027365	1095.88