Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2562g00006 ATGAAACAGGGTAGAAGATGGAAGCCGAAGGTAGTGGACGTTGAAGCAGAGAAGATCTGCAGGGATTGCCACACAAGGACTACCCCACTATGGAGGGCGGGTCCAGATGGGCCAAGGTCTCTGTGCAATGCATGCGGATTACGATTCAGAAAAGGAATGGCTCTTCGAGGGCTGAGTAGTGCAGTGCCACAAAAACGCAAGAAGAGGACTCCGAATGGTAGAGTCATGAAGCAGCGCATGCCGATTGGAAGGCAGATGAAGTTAAGAGAGGAAGAAGAAGCCGCCATATCACTGATGGCTCTTTCTTGTGGCTCTACCTACCCACCAGAGCGACACTAG 339 0.5162 MKQGRRWKPKVVDVEAEKICRDCHTRTTPLWRAGPDGPRSLCNACGLRFRKGMALRGLSSAVPQKRKKRTPNGRVMKQRMPIGRQMKLREEEEAAISLMALSCGSTYPPERH 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2562g00006 112 PANTHER OS01G0976800 PROTEIN 15 107 - -
Pral2562g00006 112 Gene3D - 15 92 IPR013088 GO:0006355|GO:0008270
Pral2562g00006 112 ProSitePatterns GATA-type zinc finger domain. 20 45 IPR000679 GO:0006355|GO:0043565
Pral2562g00006 112 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 13 61 - -
Pral2562g00006 112 ProSiteProfiles GATA-type zinc finger domain profile. 14 79 IPR000679 GO:0006355|GO:0043565
Pral2562g00006 112 CDD ZnF_GATA 19 69 IPR000679 GO:0006355|GO:0043565
Pral2562g00006 112 SMART GATA_3 14 71 IPR000679 GO:0006355|GO:0043565
Pral2562g00006 112 Pfam GATA zinc finger 20 52 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2562g00006 Pral-Chr2562 19171 19824 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2562g00006 18 106 C2C2-Gata Transcription Factor Family AT3G06740 45.370 8.72e-19 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pral2562g00006 GATA 7.1e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2562g00006 - - sind:105163077 97.4413