Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2558g00013 ATGGAGAAAGTTGCTCATACTGATCAAGCTGATGAGGTGCTAGCTTTGCATCCACCAATTTCCGATGTATCATGCAATGCAGAGCCCAAACAGGCTGTCCCCATTAAGTATTCTGTTGTCAATAGGCGTGGGTTTGGGACTATGGGGAAACAAATGCCATTGCTTGCCAATCATTTCCAGGTTTCTGTTGGCGTACCAGATGCTGTATTTTTCCAGTATAGTGTTTCTATTACTTCAGAAAATGGTATAGCTATTGAAAGCAAGGGCATTGGGAGAAAACTGATTGAGAAGCTTTACCAAAGCTACTCTTCTGAACTTGGTGGCAAAAGCTTTGCCTATGATGGAGGGAAAACTTTGTATACAGTAGGTGCTCTGCCACATCAAAAGCTTGAGTTCACGGTAGTACTTGAAGAATCATTAGCAAAATGCAGTAGTTCTGGTAGTCCTGGTGCTGATGGAAGCCTTAGTGTGGGAAATAAAAGGTCAAAGCATTATTTTAAGTCAAAGCTTTTCAATGTAAAGATGAATTTTGCTGCCAAAGTACCCCTGCGGTCCATTGCTTTTGCCCTGGAAGGAGTTGAGTCAGATTCTAATGCTCAGGATGCTTTGAGAGTGCTTAATACCATTCTGAGGCAACAAGCAGCTAGCATGAGGTGTCTTTTGGTAAGGCAATCATTCTTTCGCGATGACTTGAGGAATTTCACTGATGTTGGAGGTGGGGTAACGGGAGTTCAAGGTTTTCATTCCAGCTTTCATCCTACACAGGGTGGATTGTCTCTCAACATGGATGTGTCCACAACAATGATCTTAACCCCTGGACCTGTAATTAATTTTCTTCTATCCAACCAGAATGTGAGGGAACCCCGTTATATTGACTGGGCAAAGGCCAAGAGAATGCTTAAAAATTTAAGGGTGCGTGCTTCTCATCGCAACCAGGAATTTAGAATTATTGGCTTGAGTGAGAAACCATGTAATCAGCAAGTTTTCAGTATGAAGGTGAAAAATGGTGAGGGCAGTAATGGAGCGGAGACTGTGGATATCACTGTTTATGAGTATTTTGCTAAACACTGCGGCATAGAACTGACTTCTGCATATCTTCCTTGCCTTGATGTGGGGAAGCCAAAACGGCCCATCTATTTGCCCATGGAGGCATTATCTGCAATTCAGAGAGCTTCTTTAGTTGAAAAATCACGACAAAAGCCTCAAGATAGAATCAAAGCCATAACAGATGCTATGGCACATCATCACTATGATGATGATCCTGTTCTTGCGGAATGTGGCATTTCTATCCAGAAGCAATTTATACAAGTTGAAGGTCGAGTTCTTGAGACTCCAAAGTTGAAGGTTGGTAAGAATGATGAGTGCTTCCCTCGTAATGGACGGTGGAACTTTAATAACAAGACACTTCTACAACCAACTCGCATTGATATCTGGGCTGTGGTCAACTTTTCAGCTCGTTGTGATACTAGTTACATTTCAAGGGAGCTTATCAAATGTGGAATGAATAAAGGCATTCAAATTGAACGCCCATATACTTTAATAGAAGAAGATTCACAAATTAGAAGATCTAGCCCTGTTGCAAGGGTTGAAAAGATGTTTGAGCTGCTATATGCTAAGCTTCCCGAAGAACCAAACTTAATTCTTTGCGTCTTGCCAGAGAGGAAAAATTGTGACATTTATGGACCTTGGAAGAAGAAATGTCTGACTGAAGTTGGTGTTGTCTCACAATGCATTTCTCCCTTAAAGATCAATGATCAATACCTTACTAATGTACTTCTTAAAATAAATTCTAAGCTTGGAGGAATAAATTCTCTGTTGGCCATGGAGCATTCTGGGCGTATTCCTCTAATAAATGATGCTCCAACACTGATTTTAGGAATGGATGTCTCTCATGGTTCTCCTGGACGATCAGACATTCCATCAATAGCAGCGGTTGTTGGATCTAGACGTTGGCCATTAATTTCAAGGTATAGGGCCTCTGTGCGAACGCAATCATCTATGGCGGAGATGATTGACGCTCTATACAAGCCTCTGGAAGATGGGAAAGATGATGGCATGATCAGGGAACTGCTTTTAGATTTCTATCATTCCAGTAATGGACGAAAACCAACTCAAATTATTGTCTTCAGGGATGGAGTTAGTGAATCACAATTTAACCAGATTTTGAACATTGAGCTGGACCAGATAATTAAGGCCTATCAACATCTTGGAGACGTTGACGTTCCCAAGTTTACTGTAATTGTGGCACAAAAGAATCATCATACAAAGTTTTTTCATGCTAATGGTTCAGATAATGTCCCTCCTGGGACAGTCGTTGACACAAAAATTGTGCATCCACGGAATTATGACTTCTACTTGTGTTCGCATGCAGGGATGCTTGGAACTCCTAGGCCAGTACATTACCATGTGTTGCTAGATGAGATTGGTTTCTCAGCGGACGGCATACAAAACTTAATCCATTCGCTGTCTTATGTGTACCAGAGGAGTACAGCCGCGGTTTCAGTTGTGGCCCCCATATGCTATGCCCACCTTGCCGCAGCTCAGATGAGGCAATTTTTGAAATCTGATGATTCATCAGAGACATCTTCAACTTCCCCTGCTGAACTAGATGCTCCAATCTCAGAGCTTCCGAGGTTGCATCAGAATGTTCAGAGTAGCATGTTCTTCTGTTGA 2673 0.4194 MEKVAHTDQADEVLALHPPISDVSCNAEPKQAVPIKYSVVNRRGFGTMGKQMPLLANHFQVSVGVPDAVFFQYSVSITSENGIAIESKGIGRKLIEKLYQSYSSELGGKSFAYDGGKTLYTVGALPHQKLEFTVVLEESLAKCSSSGSPGADGSLSVGNKRSKHYFKSKLFNVKMNFAAKVPLRSIAFALEGVESDSNAQDALRVLNTILRQQAASMRCLLVRQSFFRDDLRNFTDVGGGVTGVQGFHSSFHPTQGGLSLNMDVSTTMILTPGPVINFLLSNQNVREPRYIDWAKAKRMLKNLRVRASHRNQEFRIIGLSEKPCNQQVFSMKVKNGEGSNGAETVDITVYEYFAKHCGIELTSAYLPCLDVGKPKRPIYLPMEALSAIQRASLVEKSRQKPQDRIKAITDAMAHHHYDDDPVLAECGISIQKQFIQVEGRVLETPKLKVGKNDECFPRNGRWNFNNKTLLQPTRIDIWAVVNFSARCDTSYISRELIKCGMNKGIQIERPYTLIEEDSQIRRSSPVARVEKMFELLYAKLPEEPNLILCVLPERKNCDIYGPWKKKCLTEVGVVSQCISPLKINDQYLTNVLLKINSKLGGINSLLAMEHSGRIPLINDAPTLILGMDVSHGSPGRSDIPSIAAVVGSRRWPLISRYRASVRTQSSMAEMIDALYKPLEDGKDDGMIRELLLDFYHSSNGRKPTQIIVFRDGVSESQFNQILNIELDQIIKAYQHLGDVDVPKFTVIVAQKNHHTKFFHANGSDNVPPGTVVDTKIVHPRNYDFYLCSHAGMLGTPRPVHYHVLLDEIGFSADGIQNLIHSLSYVYQRSTAAVSVVAPICYAHLAAAQMRQFLKSDDSSETSSTSPAELDAPISELPRLHQNVQSSMFFC 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2558g00013 890 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 33 856 - -
Pral2558g00013 890 FunFam Protein argonaute 3 614 890 - -
Pral2558g00013 890 Pfam Argonaute linker 2 domain 403 448 IPR032472 -
Pral2558g00013 890 SUPERFAMILY Ribonuclease H-like 534 852 IPR012337 -
Pral2558g00013 890 ProSiteProfiles Piwi domain profile. 546 854 IPR003165 GO:0003676
Pral2558g00013 890 Pfam Argonaute linker 1 domain 222 269 IPR014811 -
Pral2558g00013 890 CDD PAZ_argonaute_like 272 386 - -
Pral2558g00013 890 Gene3D - 441 607 - -
Pral2558g00013 890 Gene3D - 613 890 IPR036397 GO:0003676
Pral2558g00013 890 ProSiteProfiles PAZ domain profile. 297 389 IPR003100 GO:0005515
Pral2558g00013 890 SMART DUF1785_2 220 272 IPR014811 -
Pral2558g00013 890 CDD Piwi_ago-like 421 853 IPR045246 -
Pral2558g00013 890 SMART Piwi_a_2 546 854 IPR003165 GO:0003676
Pral2558g00013 890 Gene3D paz domain 266 391 - -
Pral2558g00013 890 Pfam N-terminal domain of argonaute 50 210 IPR032474 -
Pral2558g00013 890 Pfam Piwi domain 546 854 IPR003165 GO:0003676
Pral2558g00013 890 SUPERFAMILY PAZ domain 267 417 IPR036085 GO:0005515
Pral2558g00013 890 Pfam PAZ domain 277 386 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2558g00013 Pral-Chr2558 238698 247393 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2558g00013 23 890 Eukaryotic Initiation Factors Gene Family AT5G43810 36.916 3.21e-169 516