Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2558g00012 ATGGAGAAAGTTGCTCATACTGATCAAGCTGATGAGGTGCTAGCTTTGCATCCACCAATTTCCGATGTATCATGCAATGCAGAGCCCAAACAGGCTGTCCCCATTAAGTATTCTGTTGTCAATAGGCGTGGGTTTGGGACTATGGGGAAACAAATGCCATTGCTTGCCAATCATTTCCAGGTTTCTGTTGGCGTACCAGATGCTGTATTTTTCCAGTATAGTGTTTCTATTACTTCAGAAAATGGTATAGCTATTGAAAGCAAGGGCATTGGGAGAAAACTGATTGAGAAGCTTTACCAAAGCTACTCTTCTGAACTTGGTGGCAAAAGCTTTGCCTATGATGGAGGGAAAACTTTGTATACAGTAGGTGCTCTGCCACATCAAAAGCTTGAGTTCACGGTAGTACTTGAAGAATCATTAGCAAAATGCAGTAGTTCTGGTAGTCCTGGTGCTGATGGAAGCCTTAGTGTGGGAAATAAAAGGTCAAAGCATTATTTTAAGTCAAAGCTTTTCAATGTAAAGATGAATTTTGCTGCCAAAGTACCCCTGCGGTCCATTGCTTTTGCCCTGGAAGGAGTTGAGTCAGATTCTAATGCTCAGGATGCTTTGAGAGTGCTTAATACCATTCTGAGGCAACAAGCAGCTAGCATGAGGTGTCTTTTGGTAAGGCAATCATTCTTTCGCGATGACTTGAGGAATTTCACTGATGTTGGAGGTGGGGTAACGGGAGTTCAAGGTTTTCATTCCAGCTTTCATCCTACACAGGGTGGATTGTCTCTCAACATGGATGTGTCCACAACAATGATCTTAACCCCTGGACCTGTAATTAATTTTCTTCTATCCAACCAGAATGTGAGGGAACCCCGTTATATTGACTGGGCAAAGGCCAAGAGAATGCTTAAAAATTTAAGGGTGCGTGCTTCTCATCGCAACCAGGAATTTAGAATTATTGGCTTGAGTGAGAAACCATGTAATCAGCAAGTTATGAAGGTGAAAAATGGTGAGGGCAGTAATGGAGCGGAGACTGTGGATATCACTGTTTATGAGTATTTTGCTAAACACTGCGGCATAGAACTGACTTCTGCATATCTTCCTTGCCTTGATGTGGGGAAGCCAAAACGGCCCATCTATTTGCCCATGGAGCTTTGTTCGCTTATTCCCCTTCAACGTTATACAAAGGCATTATCTGCAATTCAGAGAGCTTCTTTAGTTGAAAAATCACGACAAAAGCCTCAAGATAGAATCAAAGCCATAACAGATGCTATGGCACATCATCACTATGATGATGATCCTGTTCTTGCGGAATGTGGCATTTCTATCCAGAAGCAATTTATACAAGTTGAAGGTCGAGTTCTTGAGACTCCAAAGTTGAAGGTTGGTAAGAATGATGAGTGCTTCCCTCGTAATGGACGGTGGAACTTTAATAACAAGACACTTCTACAACCAACTCGCATTGATATCTGGGCTGTGGTCAACTTTTCAGCTCGTTGTGATACTAGTTACATTTCAAGGGAGCTTATCAAATGTGGAATGAATAAAGGCATTCAAATTGAACGCCCATATACTTTAATAGAAGAAGATTCACAAATTAGAAGATCTAGCCCTGTTGCAAGGGTTGAAAAGATGTTTGAGCTGCTATATGCTAAGCTTCCCGAAGAACCAAACTTAATTCTTTGCGTCTTGCCAGAGAGGAAAAATTGTGACATTTATGGACCTTGGAAGAAGAAATGTCTGACTGAAGTTGGTGTTGTCTCACAATGCATTTCTCCCTTAAAGATCAATGATCAATACCTTACTAATGTACTTCTTAAAATAAATTCTAAGCTTGGAGGAATAAATTCTCTGTTGGCCATGGAGCATTCTGGGCGTATTCCTCTAATAAATGATGCTCCAACACTGATTTTAGGAATGGATGTCTCTCATGGTTCTCCTGGACGATCAGACATTCCATCAATAGCAGCGGTTGTTGGATCTAGACGTTGGCCATTAATTTCAAGGTATAGGGCCTCTGTGCGAACGCAATCATCTATGGCGGAGATGATTGACGCTCTATACAAGCCTCTGGAAGATGGGAAAGATGATGGCATGATCAGGGAACTGCTTTTAGATTTCTATCATTCCAGTAATGGACGAAAACCAACTCAAATTATTGTCTTCAGGGATGGAGTTAGTGAATCACAATTTAACCAGATTTTGAACATTGAGCTGGACCAGATAATTAAGGCCTATCAACATCTTGGAGACGTTGACGTTCCCAAGTTTACTGTAATTGTGGCACAAAAGAATCATCATACAAAGTTTTTTCATGCTAATGGTTCAGATAATGTCCCTCCTGGGACAGTCGTTGACACAAAAATTGTGCATCCACGGAATTATGACTTCTACTTGTGTTCGCATGCAGGGATGCTTGGAACTCCTAGGCCAGTACATTACCATGTGTTGCTAGATGAGATTGGTTTCTCAGCGGACGGCATACAAAACTTAATCCATTCGCTGTCTTATGTGTACCAGAGGAGTACAGCCGCGGTTTCAGTTGTGGCCCCCATATGCTATGCCCACCTTGCCGCAGCTCAGATGAGGCAATTTTTGAAATCTGATGATTCATCAGAGACATCTTCAACTTCCCCTGCTGAACTAGATGCTCCAATCTCAGAGCTTCCGAGGTTGCATCAGAATGTTCAGAGTAGCATGTTCTTCTGTTGA 2703 0.4192 MEKVAHTDQADEVLALHPPISDVSCNAEPKQAVPIKYSVVNRRGFGTMGKQMPLLANHFQVSVGVPDAVFFQYSVSITSENGIAIESKGIGRKLIEKLYQSYSSELGGKSFAYDGGKTLYTVGALPHQKLEFTVVLEESLAKCSSSGSPGADGSLSVGNKRSKHYFKSKLFNVKMNFAAKVPLRSIAFALEGVESDSNAQDALRVLNTILRQQAASMRCLLVRQSFFRDDLRNFTDVGGGVTGVQGFHSSFHPTQGGLSLNMDVSTTMILTPGPVINFLLSNQNVREPRYIDWAKAKRMLKNLRVRASHRNQEFRIIGLSEKPCNQQVMKVKNGEGSNGAETVDITVYEYFAKHCGIELTSAYLPCLDVGKPKRPIYLPMELCSLIPLQRYTKALSAIQRASLVEKSRQKPQDRIKAITDAMAHHHYDDDPVLAECGISIQKQFIQVEGRVLETPKLKVGKNDECFPRNGRWNFNNKTLLQPTRIDIWAVVNFSARCDTSYISRELIKCGMNKGIQIERPYTLIEEDSQIRRSSPVARVEKMFELLYAKLPEEPNLILCVLPERKNCDIYGPWKKKCLTEVGVVSQCISPLKINDQYLTNVLLKINSKLGGINSLLAMEHSGRIPLINDAPTLILGMDVSHGSPGRSDIPSIAAVVGSRRWPLISRYRASVRTQSSMAEMIDALYKPLEDGKDDGMIRELLLDFYHSSNGRKPTQIIVFRDGVSESQFNQILNIELDQIIKAYQHLGDVDVPKFTVIVAQKNHHTKFFHANGSDNVPPGTVVDTKIVHPRNYDFYLCSHAGMLGTPRPVHYHVLLDEIGFSADGIQNLIHSLSYVYQRSTAAVSVVAPICYAHLAAAQMRQFLKSDDSSETSSTSPAELDAPISELPRLHQNVQSSMFFC 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2558g00012 900 Gene3D paz domain 266 391 - -
Pral2558g00012 900 SMART PAZ_2_a_3 267 409 IPR003100 GO:0005515
Pral2558g00012 900 SUPERFAMILY Ribonuclease H-like 544 862 IPR012337 -
Pral2558g00012 900 Gene3D - 623 900 IPR036397 GO:0003676
Pral2558g00012 900 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 33 866 - -
Pral2558g00012 900 CDD PAZ_argonaute_like 272 386 - -
Pral2558g00012 900 ProSiteProfiles Piwi domain profile. 556 864 IPR003165 GO:0003676
Pral2558g00012 900 SMART DUF1785_2 220 272 IPR014811 -
Pral2558g00012 900 SUPERFAMILY PAZ domain 267 427 IPR036085 GO:0005515
Pral2558g00012 900 Pfam Piwi domain 556 864 IPR003165 GO:0003676
Pral2558g00012 900 SMART Piwi_a_2 556 864 IPR003165 GO:0003676
Pral2558g00012 900 Pfam Argonaute linker 2 domain 413 458 IPR032472 -
Pral2558g00012 900 Pfam Argonaute linker 1 domain 222 269 IPR014811 -
Pral2558g00012 900 Pfam PAZ domain 277 403 IPR003100 GO:0005515
Pral2558g00012 900 FunFam Protein argonaute 3 624 900 - -
Pral2558g00012 900 Pfam N-terminal domain of argonaute 50 210 IPR032474 -
Pral2558g00012 900 Gene3D - 451 617 - -
Pral2558g00012 900 CDD Piwi_ago-like 431 863 IPR045246 -
Pral2558g00012 900 ProSiteProfiles PAZ domain profile. 297 387 IPR003100 GO:0005515
Pral2558g00012 900 FunFam Protein argonaute 7 267 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2558g00012 Pral-Chr2558 238698 247393 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2558g00012 23 900 Eukaryotic Initiation Factors Gene Family AT5G43810 37.541 7.75e-177 536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2558g00012 K11593 - qsu:111993396 1311.98