Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2558g00011 ATGGAGAAAGTTGCTCATACTGATCAAGCTGATGAGGTGCTAGCTTTGCATCCACCAATTTCCGATGTATCATGCAATGCAGAGCCCAAACAGGCTGTCCCCATTAAGTATTCTGTTGTCAATAGGCGTGGGTTTGGGACTATGGGGAAACAAATGCCATTGCTTGCCAATCATTTCCAGGTTTCTGTTGGCGTACCAGATGCTGTATTTTTCCAGTATAGTGTTTCTATTACTTCAGAAAATGGTATAGCTATTGAAAGCAAGGGCATTGGGAGAAAACTGATTGAGAAGCTTTACCAAAGCTACTCTTCTGAACTTGGTGGCAAAAGCTTTGCCTATGATGGAGGGAAAACTTTGTATACAGTAGGTGCTCTGCCACATCAAAAGCTTGAGTTCACGGTAGTACTTGAAGAATCATTAGCAAAATGTAGTTCTGGTAGTCCTGGTGCTGATGGAAGCCTTAGTGTGGGAAATAAAAGGTCAAAGCATTATTTTAAGTCAAAGCTTTTCAATGTAAAGATGAATTTTGCTGCCAAAGTACCCCTGCGGTCCATTGCTTTTGCCCTGGAAGGAGTTGAGTCAGATTCTAATGCTCAGGATGCTTTGAGAGTGCTTAATACCATTCTGAGGCAACAAGCAGCTAGCATGAGGTGTCTTTTGGTAAGGCAATCATTCTTTCGCGATGACTTGAGGAATTTCACTGATGTTGGAGGTGGGGTAACGGGAGTTCAAGGTTTTCATTCCAGCTTTCATCCTACACAGGGTGGATTGTCTCTCAACATGGATGTGTCCACAACAATGATCTTAACCCCTGGACCTGTAATTAATTTTCTTCTATCCAACCAGAATGTGAGGGAACCCCGTTATATTGACTGGGCAAAGGCCAAGAGAATGCTTAAAAATTTAAGGGTGCGTGCTTCTCATCGCAACCAGGAATTTAGAATTATTGGCTTGAGTGAGAAACCATGTAATCAGCAAGTTTTCAGTATGAAGGTGAAAAATGGTGAGGGCAGTAATGGAGCGGAGACTGTGGATATCACTGTTTATGAGTATTTTGCTAAACACTGCGGCATAGAACTGACTTCTGCATATCTTCCTTGCCTTGATGTGGGGAAGCCAAAACGGCCCATCTATTTGCCCATGGAGCTTTGTTCGCTTATTCCCCTTCAACGTTATACAAAGGCATTATCTGCAATTCAGAGAGCTTCTTTAGTTGAAAAATCACGACAAAAGCCTCAAGATAGAATCAAAGCCATAACAGATGCTATGGCACATCATCACTATGATGATGATCCTGTTCTTGCGGAATGTGGCATTTCTATCCAGAAGCAATTTATACAAGTTGAAGGTCGAGTTCTTGAGACTCCAAAGTTGAAGGTTGGTAAGAATGATGAGTGCTTCCCTCGTAATGGACGGTGGAACTTTAATAACAAGACACTTCTACAACCAACTCGCATTGATATCTGGGCTGTGGTCAACTTTTCAGCTCGTTGTGATACTAGTTACATTTCAAGGGAGCTTATCAAATGTGGAATGAATAAAGGCATTCAAATTGAACGCCCATATACTTTAATAGAAGAAGATTCACAAATTAGAAGATCTAGCCCTGTTGCAAGGGTTGAAAAGATGTTTGAGCTGCTATATGCTAAGCTTCCCGAAGAACCAAACTTAATTCTTTGCGTCTTGCCAGAGAGGAAAAATTGTGACATTTATGGACCTTGGAAGAAGAAATGTCTGACTGAAGTTGGTGTTGTCTCACAATGCATTTCTCCCTTAAAGATCAATGATCAATACCTTACTAATGTACTTCTTAAAATAAATTCTAAGCTTGGAGGAATAAATTCTCTGTTGGCCATGGAGCATTCTGGGCGTATTCCTCTAATAAATGATGCTCCAACACTGATTTTAGGAATGGATGTCTCTCATGGTTCTCCTGGACGATCAGACATTCCATCAATAGCAGCGGTTGTTGGATCTAGACGTTGGCCATTAATTTCAAGGTATAGGGCCTCTGTGCGAACGCAATCATCTATGGCGGAGATGATTGACGCTCTATACAAGCCTCTGGAAGATGGGAAAGATGATGGCATGATCAGGGAACTGCTTTTAGATTTCTATCATTCCAGTAATGGACGAAAACCAACTCAAATTATTGTCTTCAGGGATGGAGTTAGTGAATCACAATTTAACCAGATTTTGAACATTGAGCTGGACCAGATAATTAAGGCCTATCAACATCTTGGAGACGTTGACGTTCCCAAGTTTACTGTAATTGTGGCACAAAAGAATCATCATACAAAGTTTTTTCATGCTAATGGTTCAGATAATGTCCCTCCTGGGACAGTCGTTGACACAAAAATTGTGCATCCACGGAATTATGACTTCTACTTGTGTTCGCATGCAGGGATGCTTGGAACTCCTAGGCCAGTACATTACCATGTGTTGCTAGATGAGATTGGTTTCTCAGCGGACGGCATACAAAACTTAATCCATTCGCTGTCTTATGTGTACCAGAGGAGTACAGCCGCGGTTTCAGTTGTGGCCCCCATATGCTATGCCCACCTTGCCGCAGCTCAGATGAGGCAATTTTTGAAATCTGATGATTCATCAGAGACATCTTCAACTTCCCCTGCTGAACTAGATGCTCCAATCTCAGAGCTTCCGAGGTTGCATCAGAATGTTCAGAGTAGCATGTTCTTCTGTTGA 2706 0.4187 MEKVAHTDQADEVLALHPPISDVSCNAEPKQAVPIKYSVVNRRGFGTMGKQMPLLANHFQVSVGVPDAVFFQYSVSITSENGIAIESKGIGRKLIEKLYQSYSSELGGKSFAYDGGKTLYTVGALPHQKLEFTVVLEESLAKCSSGSPGADGSLSVGNKRSKHYFKSKLFNVKMNFAAKVPLRSIAFALEGVESDSNAQDALRVLNTILRQQAASMRCLLVRQSFFRDDLRNFTDVGGGVTGVQGFHSSFHPTQGGLSLNMDVSTTMILTPGPVINFLLSNQNVREPRYIDWAKAKRMLKNLRVRASHRNQEFRIIGLSEKPCNQQVFSMKVKNGEGSNGAETVDITVYEYFAKHCGIELTSAYLPCLDVGKPKRPIYLPMELCSLIPLQRYTKALSAIQRASLVEKSRQKPQDRIKAITDAMAHHHYDDDPVLAECGISIQKQFIQVEGRVLETPKLKVGKNDECFPRNGRWNFNNKTLLQPTRIDIWAVVNFSARCDTSYISRELIKCGMNKGIQIERPYTLIEEDSQIRRSSPVARVEKMFELLYAKLPEEPNLILCVLPERKNCDIYGPWKKKCLTEVGVVSQCISPLKINDQYLTNVLLKINSKLGGINSLLAMEHSGRIPLINDAPTLILGMDVSHGSPGRSDIPSIAAVVGSRRWPLISRYRASVRTQSSMAEMIDALYKPLEDGKDDGMIRELLLDFYHSSNGRKPTQIIVFRDGVSESQFNQILNIELDQIIKAYQHLGDVDVPKFTVIVAQKNHHTKFFHANGSDNVPPGTVVDTKIVHPRNYDFYLCSHAGMLGTPRPVHYHVLLDEIGFSADGIQNLIHSLSYVYQRSTAAVSVVAPICYAHLAAAQMRQFLKSDDSSETSSTSPAELDAPISELPRLHQNVQSSMFFC 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2558g00011 901 SMART DUF1785_2 219 271 IPR014811 -
Pral2558g00011 901 SMART PAZ_2_a_3 266 410 IPR003100 GO:0005515
Pral2558g00011 901 CDD Piwi_ago-like 432 864 IPR045246 -
Pral2558g00011 901 Pfam PAZ domain 276 404 IPR003100 GO:0005515
Pral2558g00011 901 Gene3D paz domain 265 392 - -
Pral2558g00011 901 CDD PAZ_argonaute_like 271 387 - -
Pral2558g00011 901 Pfam Argonaute linker 1 domain 221 268 IPR014811 -
Pral2558g00011 901 FunFam Protein argonaute 3 625 901 - -
Pral2558g00011 901 Pfam Piwi domain 557 865 IPR003165 GO:0003676
Pral2558g00011 901 Gene3D - 624 901 IPR036397 GO:0003676
Pral2558g00011 901 ProSiteProfiles Piwi domain profile. 557 865 IPR003165 GO:0003676
Pral2558g00011 901 SMART Piwi_a_2 557 865 IPR003165 GO:0003676
Pral2558g00011 901 Gene3D - 452 618 - -
Pral2558g00011 901 SUPERFAMILY PAZ domain 266 428 IPR036085 GO:0005515
Pral2558g00011 901 FunFam Protein argonaute 7 266 392 - -
Pral2558g00011 901 SUPERFAMILY Ribonuclease H-like 545 863 IPR012337 -
Pral2558g00011 901 ProSiteProfiles PAZ domain profile. 296 388 IPR003100 GO:0005515
Pral2558g00011 901 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 33 867 - -
Pral2558g00011 901 Pfam N-terminal domain of argonaute 50 209 IPR032474 -
Pral2558g00011 901 Pfam Argonaute linker 2 domain 414 459 IPR032472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2558g00011 Pral-Chr2558 238698 247393 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2558g00011 23 901 Eukaryotic Initiation Factors Gene Family AT5G43810 37.609 6.81e-177 536