Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2558g00008 ATGGAGGACGTCGACTCCGATGAACCCGAAAAGAAGAGGCCGCATTTGAGTTCGGTATCCTCACCCATGGCGCTGAATTCAACCAATCCATCTACCAACAACAAATGTGCTGATGTGGGAGTCTTGCAGTTTCAGAACCAGCAGCTTGTTCAACAGATAGAGCTCCAAAAACAAGCATTGCATGACCTTGAAGTGAAAATTCAAGATCTAAAATACAGGGAAAATTCATATGATGACATGATAATTGCAGTGAATGAACTCTGGAATCAGTTGGCTGATGATCTGATCCTTCTTGGGATACGAGCCGGGGGAGGCCAAAATGCATTTAAGAATTTGGAGCACCCTGGTAATCCTCAAGATTCACTTTCTTTGCGTCCGGTGGAGGATATCTTTCTTTCCAGATTAGTACAGAAAGATTTCATCGAAACCAACAATCATGATGAGGTCATTAGCTTTGTTGAGGAAGCACTTGCTCTGCGTCAGTCATCAACAAGGGAGTTATTGAAACTTCTTGAAGATACCATTGATGCTCAAATTGAAAGAACTTACTGTATTACCCAGGGTTTGGAGGGGTCAACTTCAGAAGATGCTATCATTCAAATGTCTAAGATTGATGATATGATGAAAGAGGAGGCAAACAATTTGCGTGAAGTAATTGATGCTCTCCATGTCAAGCATAAAGATTATGTTGTTGCTATTGAAAATTATATCAGCTGCCACTTACATGATCAATTTGAGGTTAAACGCATAGCAGGTGAACTTGATGAAAGCATGGCTGAACTTGAAGAGAGTAGGAGAAAATTAGTCAATCTGAAAATGCAGAAAGATGCAGCAATAGGGATGCAGTCGCCTCGTTCAGATGCAGTTAATGGAACCCTGTCTCCTGAAAAGCCTTCAGACAAGACAATGGGTCTGCGCGAGTTGAAAGATTCCATTGAGGAAGCAAAGATAGTGGCAGCTGACCGTCTTTCAGAGCTTCAAGAAGCACAGGAAGACAATTTGACTTTAAGAGGGCATTTGCAAGACCTTCAGAATGAATTGACTGATGACAAGTATGTACGTTCATCTCGACTATATTCTTTGGTAAATGATCAGCTTCAACATTGGAATACTGAATTGGAGCGGTATAAAGCATTGACAGAGTCTCTGCAGGCTGAAAGGGTCCATGTCGTGAAATGGGAAAAGGAACTGAACTCAAAACTAGAGTCTGCAGATACTGCAAGGCTTACAGCTGACAATTCTGACTGTGGGATTGAAGAGCTAGAGCTTCAGCTGCAAAAGTGTACTATTGAAAAGAATGACATTGAAATTGAGATGGAAGAAGCTATACAGGATACTGGGAGAAAAGATATTAATTCTGAGTTTCATGTCATGGCTTCAGCCTTATCTAAGGAAATGGGTATGATGGAAGCTCAATTGAAACGATGGAAGGATGCAGCTCATGAGGCAGTTTCCTTGCGTGAGAAAGCACATTCATTAAGATCTTTGTTAAATGGGAAGACAAGTGAAATAAAAAGCTTAGCAAACAAATGTTCCGAGCAGGTTGTGGAGATAAAGTCTTTAAAAACATTGATTGAAAAGCTGCAGAAGGAAAAAGTGGAATTACAATTCTTTCTGGACTTGTATGGACAGGAGAATCATGAAAAAAGAGGTTTGGTAGAAATCAGAGAATCAGAAAGTAAAGCTCTCGCTCAAGCTGAAGTACTGAAAAATGCTTTAGATGAGCATAGTTTAGAGCTGAGGGTTAAAGCTGCCAATGAAGCTGAAGCTGCTTATGAACAAAGGCTTTCTGCAGCAGAAGCTGAAATAGAAGATCTAAGGTCGAAGCTGGAAGCTTCTGAAAGAGATATTTTGGAGCTGACTGAGGCTATTAAAGTCAAAGATGCTGAGTCAGAGGCTTATATATCTGAAATTGAGACTATTGGACAAGCATATGAAGATATGCAGACGCAGAACAAACATCTATTACAGCAGGTGACTGAGAGGGATGACTATAACATTAAGCTTGTATCAGAGAGCGTAAAGACAAAACAGGCACATAGCATTTTACTTTCTGAGAAGCAGGCCTTAGCAAAGCAGCTTCAACAAATTAACACTTCAATAGAAACTTTAAAGATGAGGATTACACACAGTGAAGACCAGATGAAAGCTCTTTTATCAGAAGCCATTAAATGTACTCAAGCGGAAAAACACCTTGCAGTTACCCTGGAATCTACGAAGTGGGAATTGGCTGATGCTGAAAAGGAGCTGAAGTGGCTTAGGTCTGCCGTTACTTCTTCTGAGAAAGAGTATGATCAAATTCAGAAAGACTTGGAAGCTATCCAAATTGAGTTGGATGCTGAAAGGAATTCAAAACAGAAGCTTGAGGAAGAACTCAAGGAATTAAACAGCAAAATTGATGAGCTCAGTTCCGAAACTGGAGAGACAGCAATACAAAAACTACAAGATGAAATTAGGGTTTGCAAGAACATGATCAAGTGCACTGTCTGTTCTGATCGTCCAAAGGAGGTTGTGATTGTGAAGTGTTATCATCTGTTCTGCAATCCTTGTATTCAAAGGAACTTGGAACTCCGTCATCGCAAGTGCCCTGCCTGTGGGACTGCCTTTGGTCAGAGTGATGTTCGGTTTGTGAAAATATGA 2640 0.4064 MEDVDSDEPEKKRPHLSSVSSPMALNSTNPSTNNKCADVGVLQFQNQQLVQQIELQKQALHDLEVKIQDLKYRENSYDDMIIAVNELWNQLADDLILLGIRAGGGQNAFKNLEHPGNPQDSLSLRPVEDIFLSRLVQKDFIETNNHDEVISFVEEALALRQSSTRELLKLLEDTIDAQIERTYCITQGLEGSTSEDAIIQMSKIDDMMKEEANNLREVIDALHVKHKDYVVAIENYISCHLHDQFEVKRIAGELDESMAELEESRRKLVNLKMQKDAAIGMQSPRSDAVNGTLSPEKPSDKTMGLRELKDSIEEAKIVAADRLSELQEAQEDNLTLRGHLQDLQNELTDDKYVRSSRLYSLVNDQLQHWNTELERYKALTESLQAERVHVVKWEKELNSKLESADTARLTADNSDCGIEELELQLQKCTIEKNDIEIEMEEAIQDTGRKDINSEFHVMASALSKEMGMMEAQLKRWKDAAHEAVSLREKAHSLRSLLNGKTSEIKSLANKCSEQVVEIKSLKTLIEKLQKEKVELQFFLDLYGQENHEKRGLVEIRESESKALAQAEVLKNALDEHSLELRVKAANEAEAAYEQRLSAAEAEIEDLRSKLEASERDILELTEAIKVKDAESEAYISEIETIGQAYEDMQTQNKHLLQQVTERDDYNIKLVSESVKTKQAHSILLSEKQALAKQLQQINTSIETLKMRITHSEDQMKALLSEAIKCTQAEKHLAVTLESTKWELADAEKELKWLRSAVTSSEKEYDQIQKDLEAIQIELDAERNSKQKLEEELKELNSKIDELSSETGETAIQKLQDEIRVCKNMIKCTVCSDRPKEVVIVKCYHLFCNPCIQRNLELRHRKCPACGTAFGQSDVRFVKI 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2558g00008 879 Coils Coil 687 721 - -
Pral2558g00008 879 ProSiteProfiles Zinc finger RING-type profile. 827 865 IPR001841 -
Pral2558g00008 879 Coils Coil 418 445 - -
Pral2558g00008 879 Gene3D - 688 823 - -
Pral2558g00008 879 MobiDBLite consensus disorder prediction 1 15 - -
Pral2558g00008 879 Coils Coil 511 531 - -
Pral2558g00008 879 Pfam Zinc finger, C3HC4 type (RING finger) 826 868 - -
Pral2558g00008 879 MobiDBLite consensus disorder prediction 1 32 - -
Pral2558g00008 879 Coils Coil 582 630 - -
Pral2558g00008 879 ProSitePatterns Zinc finger RING-type signature. 842 851 IPR017907 -
Pral2558g00008 879 Coils Coil 366 386 - -
Pral2558g00008 879 Coils Coil 736 805 - -
Pral2558g00008 879 SMART ring_2 827 865 IPR001841 -
Pral2558g00008 879 Coils Coil 247 274 - -
Pral2558g00008 879 Coils Coil 46 73 - -
Pral2558g00008 879 MobiDBLite consensus disorder prediction 282 302 - -
Pral2558g00008 879 Coils Coil 312 346 - -
Pral2558g00008 879 PANTHER RING FINGER PROTEIN-RELATED 6 879 IPR013956 GO:0004842|GO:0010390
Pral2558g00008 879 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 824 877 IPR013083 -
Pral2558g00008 879 CDD RING-HC_Bre1-like 819 875 - -
Pral2558g00008 879 SUPERFAMILY RING/U-box 826 870 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2558g00008 Pral-Chr2558 61454 76863 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2558g00008 801 874 RAD5 or RAD16-like Gene Family AT5G05130 27.711 1.03e-07 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2558g00008 K10696 - qsa:O6P43_020782 1288.86