Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2554g00009 ATGTCTATCACTCAATGGATCAATAATATTTCGGCTTCTCCATCACCTCCAGGATTGCTAATTACCCTTTTGATACGAGGATTGCCCGTATTGGAGCTTGCAGCGATATGCTTAAATTTGACTCTTTTTCTTGTGTCTCTGTTTATTGTCACTGCCACACGGATATTGGCGTATGCCTGTCGAAATCGAATTCGTAAGAACAACACGACCGGCTGTGCAAGCCCGGCTCCTCATTGTATTGATGGGGACATGCATGACGTTCGAATCAGTAGGGGGTTCAAATTCACAGTGTTCTGCTGTTTCTATGTTCTCTTCGTGTACATTTTGGTGTTAGGATTTGATGGGGCCGCTTTAATTAGAGGAGCAGCACATGGGAAAATTGTCGACTTATCTCTTCTTTCTATGCCAGTTTCCCAGGCGTTAGCTTGGTTCATGTTAAGCTTGTCGGCTTTGCATTGCAGATTCAAGGTGTCTGTGAAGTTTCCACTTTTGTTGAGGGTTTGGTGGTTTTTGTCCTTTGTAATTTGTTTGTGCACCGCATATGTTGATTGGAGAGAATTTTGGATGGAAGGTTCAAAGCACCTTTGCTCTCATGTTGTGGCAAATTTTGCTGTCACTCCAGCTCTTGCCTTCTTGTGTATTGTTGCGATTAGGGGTGTTACTGGTGTAAAAGTAAGCACTAACAGTGAGCTTGAAAAGCCATTGCTTCCTGATGAAGGGCCAGAGTGCCTCAAGGTTACACCTTATAGTGATGCAGGGCCTTTTAGCTTGGCTACTCTTTCTTGGCTAAACTCACTTCTTTCCGTGGGAGCAAAGAGACCACTTGAACTTAAGGACATTCCCCTTCTTGCACCGAAGGATCGAGCCAAGACCAACTACAAGGTTTTAAATGCTAACTGGGAGAGGCTGAAGAGCGAAAACCCTTATAAGCGGCCTTCACTAGCTTGGACTCTCGTCAAGTCATTCTGGAAGGAGGCAGCTTCCAATGCCATATTCGCTGGTGCGAATACTTTAGTCTCATATGTAGGTCCATACATGATAAGTTACTTTGTCAATTACTTGAGTGGTAAACACAGTTTTCCTCATGAAGGGTATATCCTGGTTGGGACATTCTTTGCAGCAAAACTTTTGGAGACCTTGACAACTCGGCAGTGGTATTTCGGGGTGGACATCTTGGGTATGCATATTAGGTCAGCTCTAACAGCAATGGTATATCAAAAGGGACTCAGGCTCTCAAGCTTGGCCAAGCAAAGTCACACAAGCGGGGAGATTGTTAACTACATGGCTATAGATGTTCAGAGGGTTGGGGACTACTCTTGGTATCTTCATGACATGTGGATGCTTCCTCTGCAAATTATTCTCGCCCTGGCAATTTTGTATAAGAATGTTGGGGTTGCTGCTTTTGCCGCATTGATTGCTACAATCATTTCCATTGTTGTCACCATTCCAGTGGCTAGGATACAAGAAGCTTATCAAGACAAATTAATGGCAGCTAAGGATGAGAGAATGCGGAAAACATCTGAGTGTCTCAGGAATATGAGAATTCTCAAGCTCGAGGCTTGGGAGGACAGATATCGAATAAAATTAGAGGAGATGCGTGAAGTAGAGTTCAAGTGGCTTCGGAGTGCCCTCTATGCCCAGGCTTTCATTACTTTCTTCTTCTGGAGCTCCCCTATATTTGTGTCTGCTGTCACTTTCGGCACTTCCATATTGATGGGTGGTAAGCTGACTGCAGGTAGTGTTCTTTCTGCTTTGGCTACTTTCAGGATCCTCCAAGAACCTCTAAGAAATTTTCCTGATTTAGTATCGACAATGGCTCAGACAAAAGTCTCTCTTGATCGCATCGTTGGTTTCCTGCAAGAGGAAGAATTGCAGGAAGGTGCAACTGTTAACTTGCCACGAGGCCCTTCTAACATTGCCGTAGAGATTAATGATGGAGTCTTTTGTTGGGATCCTTCTTCATCTAGACCTACTCTGTCAGGGATACATATTAAAGTGAAAAGAGGGATGCGAGTGGCTGTTTGTGGTGTGGTTGGTTCTGGGAAATCAAGTTTTCTTTCTTGCATTCTTGGAGAGATACCTAAGATTTCCGGTGATGTAAGAGTCTTTGGCTCTTCTGCGTATGTATCCCAATCAGCATGGATACAGTCAGGAAATATAAAAGAAAATATCCTCTTTGGAAGCCCGATGGACAAAGTAAAATACAAGAATGTTCTTCATGCTTGTTCACTAAAAAAGGATCTGGAACTCTTCTCACATAGTGCAACCATCATTGGTGATAGAGGTATAAACCTAAGTGGTGGCCAGAAGCAGAGGGTGCAGCTTGCACGAGCACTCTACCAAGATTCTGACATATATCTCCTTGATGATCCCTTTAGTGCAGTTGATGCCCATACTGGGTCAGAATTGTTTAGGGAATACATATTGACAGCACTAGCAGATAAGACAGTCATTTTTGTGACCCACCAAGTTGAGTTTCTTCCTGCTGCTGATATGATCCTGGTTCTGAAAGAAGGCCGCATCATACAAGCAGGAAAATATGATGATCTTTTACAAGCAGGAACAGATTTTGAAACTCTAGTGTCAGCTCACCATGAAGCAATAGAGGCTATGGATATTCCTAATCAATTCTCAGAAGAGTCAGATGAAAATTTGTCCTCGGATGCATCTGTTATGACTAATAAAAAATTGGTTCCATCAGATGTTGACAGTTTGGCAAAGGAAGTGAAAGAGGGTTCATCAGCTTCTGAAGAGAAAGCAATTAAGGTGAAGAAGAAAGCAAAATGCGCAGAAGATAAACAACTTGTTCAGGAAGAGGAGAGGGTAAGAGGTAGAATTAGCATGAAGGTGTACTTTTCGTACATGGCTGCAGCATACAAAGGCCTATTGATTCCACTCATAATCATTGCTCAAGCACTATTTCAGTTCCTTCAAATTGCCAGCAATTGGTGGATGGCTTGGGCAAATCCTCAGACCGCAGGAGAGCAACCCAAAACAACTCCTATGATTCTTCTGCTTGTTTACATGGCCCTTGCTTTTGGAAGCTCTTGGTTTATTTTTATTAGGGCTGTTCTAGTAGCAACATTCGGTCTAGCAGCTTCACAAAAGCTTTTTTTGAATATGCTTAGAAGTATTTTCCGTTCACCAATGTCTTTCTTTGACTCTACTCCAGCTGGAAGGATTTTGAATCGTGTATCAATTGATCAAAGTGTTGTGGACCTTGACATTCCTTTCAGACTGGGTGGATTTGCTTCAACGACAATCCAGCTTATTGGTATTGTTGGTGTGATGACAAAAGTCACCTGGCAAATTTTGCTTCTAATTGTCCCTATGGCTGTTTCTTGTTTGTGGATGCAGAAATACTATATGGCTTCCTCAAGGGAACTGGTTCGTATTGTAAGCATCCAGAAATCTCCAATTATAAATCTTTTTGGTGAATCAATCGGTGGAGCGACCACCATCAGAAGTTTTGGACAAGGAAAAAGGTTCATGAAGAGGAACCTCTATCTTCTAGATTGTTTTGCACGTCCTTTCTTCTGCAGTATTGCAGCTATTGAGTGGCTCTGCTTGCGCATGGAATTATTGTCAACCTTTGTGTTTGCTCTCTGCATGATATTAGTAGTGAGCTTTCCACGTGGAACTATTGACCCCAGCATGGCTGGACTTGCTGTGACATATGGACTGAATTTAAACGCACGATTATCACGGTGGATACTTAGCTTTTGCAAACTTGAAAATAAAATAATATCCATTGAAAGAATATACCAATACAGCCAAATTCCTAGTGAAGCACCAACGACTGTTGAAGAATTTCGTCCTCCATCCACATGGCCTGAGAATGGGAAAATTGAAATTGTTGATTTAAAGGTTCGTTACAAGGAGAATATGCCTTTGGTGCTTCAAGGAGTATCTTGCACATTTCCTGGTGGAAAGAAAATTGGAATAGTTGGACGGACTGGAAGTGGCAAATCCACTTTGATTCAGGCATTATTTCGATTAATTGAACCTGCAGGTGGGAGTATCTTCATAGACAACATTAATATTTCAGATATTGGCCTTCATGACCTTCGTAGCCGTCTCAGCATCATCCCACAGGATCCGACTCTATTTGAAGGTACCATCCGAGGCAATCTTGATCCTCTTGAAGAGCACTCAGATAATGAGATTTGGGAGGCGCTAGATAAGTCTCAACTAGGAGAAATTATCCGTCAAAAGGAGCAAAAGCTTGATACACCAGTGTTAGAAAATGGAGATAATTGGAGCGTAGGACAGCGGCAACTAGTTTCTCTAGGCCGAGCTTTACTAAGGCAGGCAAAGATACTTTTTCTTGATGAAGCAACTGCATCAGTTGATACTGCCACTGATAATCTCATCCAGAAGATTATACGGACAGAATTCAAAGACTACACTGTCTGTACTATTGCACACCGTATTCCTACTGTTGTTGACAGCGATCTAGTTCTGGTACTTAGTGATGGTAGGATTGCAGAGTTTGATACCCCATCTCGACTTTTAGAGGATAAGTCGTCCATGTTTCTGAAGCTGGTGGCCGAATACTCATCACGCTCAAGTGGCATTCCAGATTTTTGA 4590 0.4251 MSITQWINNISASPSPPGLLITLLIRGLPVLELAAICLNLTLFLVSLFIVTATRILAYACRNRIRKNNTTGCASPAPHCIDGDMHDVRISRGFKFTVFCCFYVLFVYILVLGFDGAALIRGAAHGKIVDLSLLSMPVSQALAWFMLSLSALHCRFKVSVKFPLLLRVWWFLSFVICLCTAYVDWREFWMEGSKHLCSHVVANFAVTPALAFLCIVAIRGVTGVKVSTNSELEKPLLPDEGPECLKVTPYSDAGPFSLATLSWLNSLLSVGAKRPLELKDIPLLAPKDRAKTNYKVLNANWERLKSENPYKRPSLAWTLVKSFWKEAASNAIFAGANTLVSYVGPYMISYFVNYLSGKHSFPHEGYILVGTFFAAKLLETLTTRQWYFGVDILGMHIRSALTAMVYQKGLRLSSLAKQSHTSGEIVNYMAIDVQRVGDYSWYLHDMWMLPLQIILALAILYKNVGVAAFAALIATIISIVVTIPVARIQEAYQDKLMAAKDERMRKTSECLRNMRILKLEAWEDRYRIKLEEMREVEFKWLRSALYAQAFITFFFWSSPIFVSAVTFGTSILMGGKLTAGSVLSALATFRILQEPLRNFPDLVSTMAQTKVSLDRIVGFLQEEELQEGATVNLPRGPSNIAVEINDGVFCWDPSSSRPTLSGIHIKVKRGMRVAVCGVVGSGKSSFLSCILGEIPKISGDVRVFGSSAYVSQSAWIQSGNIKENILFGSPMDKVKYKNVLHACSLKKDLELFSHSDXTIIGDRGINLSGGQKQRVQLARALYQDSDIYLLDDPFSAVDAHTGSELFREYILTALADKTVIFVTHQVEFLPAADMILVLKEGRIIQAGKYDDLLQAGTDFETLVSAHHEAIEAMDIPNQFSEESDENLSSDASVMTNKKLVPSDVDSLAKEVKEGSSASEEKAIKVKKKAKCAEDKQLVQEEERVRGRISMKVYFSYMAAAYKGLLIPLIIIAQALFQFLQIASNWWMAWANPQTAGEQPKTTPMILLLVYMALAFGSSWFIFIRAVLVATFGLAASQKLFLNMLRSIFRSPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLIGIVGVMTKVTWQILLLIVPMAVSCLWMQKYYMASSRELVRIVSIQKSPIINLFGESIGGATTIRSFGQGKRFMKRNLYLLDCFARPFFCSIAAIEWLCLRMELLSTFVFALCMILVVSFPRGTIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPSEAPTTVEEFRPPSTWPENGKIEIVDLKVRYKENMPLVLQGVSCTFPGGKKIGIVGRTGSGKSTLIQALFRLIEPAGGSIFIDNINISDIGLHDLRSRLSIIPQDPTLFEGTIRGNLDPLEEHSDNEIWEALDKSQLGEIIRQKEQKLDTPVLENGDNWSVGQRQLVSLGRALLRQAKILFLDEATASVDTATDNLIQKIIRTEFKDYTVCTIAHRIPTVVDSDLVLVLSDGRIAEFDTPSRLLEDKSSMFLKLVAEYSSRSSGIPDF 1530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2554g00009 1530 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 330 607 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral2554g00009 1530 CDD ABC_6TM_ABCC_D1 330 615 IPR044746 GO:0140359
Pral2554g00009 1530 ProSitePatterns ABC transporters family signature. 766 780 IPR017871 GO:0005524|GO:0016887
Pral2554g00009 1530 FunFam ABC transporter C family member 3 1267 1519 - -
Pral2554g00009 1530 FunFam ABC transporter C family member 5 627 873 - -
Pral2554g00009 1530 CDD ABC_6TM_ABCC_D2 965 1259 IPR044726 GO:0140359
Pral2554g00009 1530 Pfam ABC transporter 659 793 IPR003439 GO:0005524
Pral2554g00009 1530 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1276 1513 IPR027417 -
Pral2554g00009 1530 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1284 1518 IPR003439 GO:0005524
Pral2554g00009 1530 FunFam ABC transporter C family member 5 928 1265 - -
Pral2554g00009 1530 SUPERFAMILY ABC transporter transmembrane region 310 623 IPR036640 GO:0005524|GO:0016020
Pral2554g00009 1530 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 637 863 IPR027417 -
Pral2554g00009 1530 CDD ABCC_MRP_domain2 1282 1502 - -
Pral2554g00009 1530 Coils Coil 286 306 - -
Pral2554g00009 1530 Gene3D - 1267 1520 IPR027417 -
Pral2554g00009 1530 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 967 1237 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral2554g00009 1530 Gene3D ABC transporter type 1, transmembrane domain 926 1265 IPR036640 GO:0005524|GO:0016020
Pral2554g00009 1530 Gene3D ABC transporter type 1, transmembrane domain 299 624 IPR036640 GO:0005524|GO:0016020
Pral2554g00009 1530 Pfam ABC transporter transmembrane region 967 1211 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral2554g00009 1530 Pfam ABC transporter transmembrane region 331 595 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral2554g00009 1530 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 249 1520 - -
Pral2554g00009 1530 Gene3D - 639 871 IPR027417 -
Pral2554g00009 1530 Pfam ABC transporter 1301 1449 IPR003439 GO:0005524
Pral2554g00009 1530 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 641 864 IPR003439 GO:0005524
Pral2554g00009 1530 SUPERFAMILY ABC transporter transmembrane region 964 1264 IPR036640 GO:0005524|GO:0016020
Pral2554g00009 1530 FunFam ABC transporter C family member 10 310 623 - -
Pral2554g00009 1530 SMART AAA_5 668 849 IPR003593 GO:0016887
Pral2554g00009 1530 SMART AAA_5 1310 1503 IPR003593 GO:0016887
Pral2554g00009 1530 CDD ABCC_MRP_domain1 641 841 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2554g00009 Pral-Chr2554 25906 32991 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2554g00009 641 857 Calmodulin-binding Proteins AT2G36910 29.004 7.81e-21 98.2