Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2545g00008 ATGAGTCCACCTGCTGAGGAGAAGATGGAAGATGTTAAGCCATTAGCCGCCTCAGCCAACAGCTCACAGGGCGAACATGGTGACCCTGCTGACTCTCGATTCACTGAATTCTGCAAGAACGGGTTGTCATTGGATGATGAAAGTTGCAGACAAGCAACGAAGCTGTTCAGCGAAACCAAACACCTTCTACAGACCAATGTATCATCTCTCGGGAATGGAACGTATGAAGAAGCAGAACGGTATTGGTTTTCCTTTGTCTTGTACTGTGTCAAGAGATTGGCTGATAAGCATACGGAAAGTGAGAAGGAAGTGACTGATAGCAATGGACTTACCTTGTGCCAGATATTGAGAAGGGCAAAGTTAAACATTGTGGACTTTTTCAAAGAACTTCCTCAGTTTCTTGTTAAGGGTGGTCCGATTTTAAGTAACTTATATGGCACAGATTGGGAAAACAGGCTTGAGGCAAAGGAGTTGCATGCAAACTTTCTTCACTTAAGCATTCTTAGCAAGTATTACAAACGTGCATTCGGGGAGTTCTTCTTGGTAAATGATGCTACTGAAAAAAATTCAGCTGCTTCCAGGGCTGGTGATTATGCATCTCAATATCATCGATTTGGATGGTTGGTTTTTTTGGCTCTTCGAGTCCATGCTTTCAGCCGATTTAAAGACTTGGTGACTTGCACCAATGGTTTAGTTTCTATACTGGCTATCTTGATTATTCATATTCCTGCTCGCTTCAGAAATTTTGACATTCATGATGCGTCACGCTTTGTTAAGAAGAGTAGCAAAGGTGTGGACATCATAGCATCACTTTGCAACATGTATGACACTTCAGAAGATGATGTGAGAAAAACTATGGAGAAAGCCAATAATTTAATTGCAGATATATTGAAGAAGAAGCCTTGTCTAGCATCTGAATGCGAAACTGCAACACTTGAGAGTATTGACAAAGATGGTTTGTTCTACTTTAATGATCTTATGGAAGAATCATCTCTACCATCTTGTTTAAATATCTTAGAAAAGGATTATGATGATGCCATTCGTAACAAAGGTGAGCTGGATGAGAGGTTATTTATCAATGAGGAGGACAGCTTATTAGCTTCAGGAAGCTTGTCTGGAGGTTCAATGTCAGCAAGTGGTGTCAAGAGGAAATTTGATTCATTGGCGTCACCTACAAAGACGATTACAAGCCCACTCTCTCCCCAATGCTCTCCTGCATCTCATCATGCAAATGGCATTCCAATTAGCACAACTTCAAAGATGGCTGCCACTCCTGTAACCACTGCTATGACTACTGCTAAGTGGCTTCGTACTGTCATATGTCCACTTCCATCAAAGCCTTCTCCTGAGCTGGAGAAATTTCTGGCATCATGTGATAGGGATGTCTCAAGTGACGTAGTGCGCAGGGCACAGATTATATTGCAGGCTATATTTCCTAGTAGTCCTTTGGGAGAGCGATGTTTAACTGGAAGCCTTCAAAGTGCAAACCTCATGGACAATGTTTGGGCAGAACAACGGAGACTGGAAGCCCTGAAGTTATATTATAGGGTCCTGGAGGCAATGTGCAGAGCAGAGTCCCAAATACTGCATGCAACCAATTTAACGTCATTATTAACTAATGAGAGGTTCCATAGATGCATGCTTGCATGTTCTGCAGAATTAGTGCTGGCAACACATAAGACCGTAACAATGTTGTTTCCTGCAGTGCTAGAAAGGACTGGAATTACAGCTTTTGACCTTAGCAAGGTGATAGAAAGCTTCATAAGACATGAAGATTCTCTCCCAAGAGAATTGAGGCGACATCTGAATTCATTGGAAGAACGGCTTTTAGAGAGTATGGTATGGGAAAAGGGTTCCTCGATGTATAATTCTTTGACAGTTGCCAGACCTTCCCTCTCTTCTGAAATAACTCGTCTCGGATTGTTAGCTGAACCAATGCCATCATTAGATGCAATTGCAACACATATTAATTTCTCTTGTGGGGGGCTACCTCCTGGGCCTTCCTTGCAGAAGCCTGAGACTTTGCCAAGTCAAAATGGGGATATTAGGTCTCCTAAACGACTCTGCACAGAATATCGGAGTGTACTAGCAGAACGAAATTCCTTTACCTCACCAGTGAAGGATCGACTTCTTCCCTTCAGTAACCTTAAGTCAAAGCTACCTCCTCCTTTGCAGTCAGCTTTTGCAAGTCCAACAAGACCAAATCCAGGGGGTGGGGGGGAGACTTGTGCAGAAACAGGGATCAATATCTTTTTTGGAAAGATTGTTAAGTTGGCAGCAGTCAGAATAAGTGGCATGGTTGAAAGGCTCCAATTGTCTCAACAGATAAGAGAGAATGTGTACCGTCTTTTCCAACAAATACTTAATCAAAGGACGTCACTTTTCTTCAACCGCCATATTGATCAAATCATTCTATGTTGTTTCTATGGAATTGCAAAGATTTCTCAACTGAACTTAACTTTTAGGGAGATCATTTACAATTATAGGAAGCAACCACAATGCAAACCACAAGTTTTTCGCGGTGTATTTATTGACTGGTCATCAACACGCCGCAATGGGAGAACCGGACAGGAGCATGTTGATATCATTACATTTTACAATGAAATATTCATTCCCTCTGTAAAAGCTCTGCTGGTTGAGCTTGGTCCTGGGGGAACAACTACAAAAGCCAACCGGATACCTGAAGCCAACAATAACAATGATGACCATTTAGCTCAGTGTCCTGGATCTCCTAAAATTTCACCTTTTCCTAGCCTTCCTGATATGTCCCCGAAGAAAGTATCTGCAACACACAACGTATATGTCTCACCATTGCGATCAGCCAAGATGGATGCCCTAATATCACATAGCTCAAAAAGCTACTATGCCTGCGTTGGGGAGAGCACTCATGCATATCAGAGCCCTTCAAAAGACCTGACGGCCATCAATAACCGTTTGAATGGCACCCGGAAGGTTAGGGGACCTCTCAACTTTGATGATGTTGATGTTGGCTTGGTCAGTGACTCCATGGTTGCAAACAGTCTCTATCTGCAGAATGGAAGCTGTGCATCCTCATCTGGGGCACCAGTGAAGTCTGAGCAGCCGGACAGTTGA 3093 0.4284 MSPPAEEKMEDVKPLAASANSSQGEHGDPADSRFTEFCKNGLSLDDESCRQATKLFSETKHLLQTNVSSLGNGTYEEAERYWFSFVLYCVKRLADKHTESEKEVTDSNGLTLCQILRRAKLNIVDFFKELPQFLVKGGPILSNLYGTDWENRLEAKELHANFLHLSILSKYYKRAFGEFFLVNDATEKNSAASRAGDYASQYHRFGWLVFLALRVHAFSRFKDLVTCTNGLVSILAILIIHIPARFRNFDIHDASRFVKKSSKGVDIIASLCNMYDTSEDDVRKTMEKANNLIADILKKKPCLASECETATLESIDKDGLFYFNDLMEESSLPSCLNILEKDYDDAIRNKGELDERLFINEEDSLLASGSLSGGSMSASGVKRKFDSLASPTKTITSPLSPQCSPASHHANGIPISTTSKMAATPVTTAMTTAKWLRTVICPLPSKPSPELEKFLASCDRDVSSDVVRRAQIILQAIFPSSPLGERCLTGSLQSANLMDNVWAEQRRLEALKLYYRVLEAMCRAESQILHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEDSLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPSLSSEITRLGLLAEPMPSLDAIATHINFSCGGLPPGPSLQKPETLPSQNGDIRSPKRLCTEYRSVLAERNSFTSPVKDRLLPFSNLKSKLPPPLQSAFASPTRPNPGGGGETCAETGINIFFGKIVKLAAVRISGMVERLQLSQQIRENVYRLFQQILNQRTSLFFNRHIDQIILCCFYGIAKISQLNLTFREIIYNYRKQPQCKPQVFRGVFIDWSSTRRNGRTGQEHVDIITFYNEIFIPSVKALLVELGPGGTTTKANRIPEANNNNDDHLAQCPGSPKISPFPSLPDMSPKKVSATHNVYVSPLRSAKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNGTRKVRGPLNFDDVDVGLVSDSMVANSLYLQNGSCASSSGAPVKSEQPDS 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2545g00008 1030 FunFam Retinoblastoma-related protein 1 202 360 - -
Pral2545g00008 1030 Gene3D - 202 360 - -
Pral2545g00008 1030 FunFam Retinoblastoma-related protein 1 699 911 - -
Pral2545g00008 1030 Pfam Retinoblastoma-associated protein B domain 748 875 IPR002719 GO:0005634|GO:0051726
Pral2545g00008 1030 SMART DUF3452_2 99 241 IPR024599 -
Pral2545g00008 1030 Gene3D - 427 615 - -
Pral2545g00008 1030 Coils Coil 336 356 - -
Pral2545g00008 1030 Gene3D - 712 900 - -
Pral2545g00008 1030 Pfam Domain of unknown function (DUF3452) 103 241 IPR024599 -
Pral2545g00008 1030 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 31 1028 IPR028309 GO:0006357|GO:0051726
Pral2545g00008 1030 FunFam Retinoblastoma-related protein 1 427 615 - -
Pral2545g00008 1030 SMART RB_A_2 424 625 IPR002720 GO:0005634|GO:0051726
Pral2545g00008 1030 SUPERFAMILY Cyclin-like 746 918 IPR036915 -
Pral2545g00008 1030 MobiDBLite consensus disorder prediction 1 30 - -
Pral2545g00008 1030 Pfam Retinoblastoma-associated protein A domain 424 625 IPR002720 GO:0005634|GO:0051726
Pral2545g00008 1030 SUPERFAMILY Cyclin-like 432 627 IPR036915 -
Pral2545g00008 1030 CDD CYCLIN_AtRBR_like 748 879 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2545g00008 Pral-Chr2545 48217 55722 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2545g00008 9 1030 Core Cell Cycle Gene Families AT3G12280 70.058 0.0 1417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Pral2545g00008 RB_A 3.3e-64 CL0065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2545g00008 K04681 - qsa:O6P43_001515 1707.58