Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2545g00007 ATGAGTCCACCTGCTGAGGAGAAGATGGAAGATGTTAAGCCATTAGCCGCCTCAGCCAACAGCTCACAGGGCGAACATGGTGACCCTGCTGACTCTCGATTCACTGAATTCTGCAAGAACGGGTTGTCATTGGATGATGAAAGTTGCAGACAAGCAACGAAGCTGTTCAGCGAAACCAAACACCTTCTACAGACCAATGTATCATCTCTCGGGAATGGAACGTATGAAGAAGCAGAACGGTATTGGTTTTCCTTTGTCTTGTACTGTGTCAAGAGATTGGCTGATAAGCATACGGAAAGTGAGAAGGAAGTGACTGATAGCAATGGACTTACCTTGTGCCAGATATTGAGAAGGGCAAAGTTAAACATTGTGGACTTTTTCAAAGAACTTCCTCAGTTTCTTGTTAAGGGTGGTCCGATTTTAAGTAACTTATATGGCACAGATTGGGAAAACAGGCTTGAGGCAAAGGAGTTGCATGCAAACTTTCTTCACTTAAGCATTCTTAGCAAGTATTACAAACGTGCATTCGGGGAGTTCTTCTTGGTAAATGATGCTACTGAAAAAAATTCAGCTGCTTCCAGGGCTGGTGATTATGCATCTCAATATCATCGATTTGGATGGTTGGTTTTTTTGGCTCTTCGAGTCCATGCTTTCAGCCGATTTAAAGACTTGGTGACTTGCACCAATGGTTTAGTTTCTATACTGGCTATCTTGATTATTCATATTCCTGCTCGCTTCAGAAATTTTGACATTCATGATGCGTCACGCTTTGTTAAGAAGAGTAGCAAAGGTGTGGACATCATAGCATCACTTTGCAACATGTATGACACTTCAGAAGATGATGTGAGAAAAACTATGGAGAAAGCCAATAATTTAATTGCAGATATATTGAAGAAGAAGCCTTGTCTAGCATCTGAATGCGAAACTGCAACACTTGAGAGTATTGACAAAGATGGTTTGTTCTACTTTAATGATCTTATGGAAGAATCATCTCTACCATCTTGTTTAAATATCTTAGAAAAGGATTATGATGATGCCATTCGTAACAAAGGTGAGCTGGATGAGAGGTTATTTATCAATGAGGAGGACAGCTTATTAGCTTCAGGAAGCTTGTCTGGAGGTTCAATGTCAGCAAGTGGTGTCAAGAGGAAATTTGATTCATTGGCGTCACCTACAAAGACGATTACAAGCCCACTCTCTCCCCAATGCTCTCCTGCATCTCATCATGCAAATGGCATTCCAATTAGCACAACTTCAAAGATGGCTGCCACTCCTGTAACCACTGCTATGACTACTGCTAAGTGGCTTCGTACTGTCATATGTCCACTTCCATCAAAGCCTTCTCCTGAGCTGGAGAAATTTCTGGCATCATGTGATAGGGATGTCTCAAGTGACGTAGTGCGCAGGGCACAGATTATATTGCAGGCTATATTTCCTAGTAGTCCTTTGGGAGAGCGATGTTTAACTGGAAGCCTTCAAAGTGCAAACCTCATGGACAATGTTTGGGCAGAACAACGGAGACTGGAAGCCCTGAAGTTATATTATAGGGTCCTGGAGGCAATGTGCAGAGCAGAGTCCCAAATACTGCATGCAACCAATTTAACGTCATTATTAACTAATGAGAGGTTCCATAGATGCATGCTTGCATGTTCTGCAGAATTAGTGCTGGCAACACATAAGACCGTAACAATGTTGTTTCCTGCAGTGCTAGAAAGGACTGGAATTACAGCTTTTGACCTTAGCAAGGTGATAGAAAGCTTCATAAGACATGAAGATTCTCTCCCAAGAGAATTGAGGCGACATCTGAATTCATTGGAAGAACGGCTTTTAGAGAGTATGGTATGGGAAAAGGGTTCCTCGATGTATAATTCTTTGACAGTTGCCAGACCTTCCCTCTCTTCTGAAATAACTCGTCTCGGATTGTTAGCTGAACCAATGCCATCATTAGATGCAATTGCAACACATATTAATTTCTCTTGTGGGGGGCTACCTCCTGGGCCTTCCTTGCAGAAGCCTGAGACTTTGCCAAGTCAAAATGGGGATATTAGGTCTCCTAAACGACTCTGCACAGAATATCGGAGTGTACTAGCAGAACGAAATTCCTTTACCTCACCAGTGAAGGATCGACTTCTTCCCTTCAGTAACCTTAAGTCAAAGCTACCTCCTCCTTTGCAGTCAGCTTTTGCAAGTCCAACAAGACCAAATCCAGGGGGTGGGGGGGAGACTTGTGCAGAAACAGGGATCAATATCTTTTTTGGAAAGATTGTTAAGTTGGCAGCAGTCAGAATAAGTGGCATGGTTGAAAGGCTCCAATTGTCTCAACAGATAAGAGAGAATGTGTACCGTCTTTTCCAACAAATACTTAATCAAAGGACGTCACTTTTCTTCAACCGCCATATTGATCAAATCATTCTATGTTGTTTCTATGGAATTGCAAAGATTTCTCAACTGAACTTAACTTTTAGGGAGATCATTTACAATTATAGGAAGCAACCACAATGCAAACCACAAGTTTTTCGCGGTGTATTTATTGACTGGTCATCAACACGCCGCAATGGGGTATGTAATCTGATTGGACTCCCCCTTTGCTTTATGAAAAGTCTGACCTTATATATGATTTTGGAACAGAGAACCGGACAGGAGCATGTTGATATCATTACATTTTACAATGAAATATTCATTCCCTCTGTAAAAGCTCTGCTGGTTGAGCTTGGTCCTGGGGGAACAACTACAAAAGCCAACCGGATACCTGAAGCCAACAATAACAATGATGACCATTTAGCTCAGTGTCCTGGATCTCCTAAAATTTCACCTTTTCCTAGCCTTCCTGATATGTCCCCGAAGAAAGTATCTGCAACACACAACGTATATGTCTCACCATTGCGATCAGCCAAGATGGATGCCCTAATATCACATAGCTCAAAAAGCTACTATGCCTGCGTTGGGGAGAGCACTCATGCATATCAGAGCCCTTCAAAAGACCTGACGGCCATCAATAACCGTTTGAATGGCACCCGGAAGGTTAGGGGACCTCTCAACTTTGATGATGTTGATGTTGGCTTGGTCAGTGACTCCATGGTTGCAAACAGTCTCTATCTGCAGAATGGAAGCTGTGCATCCTCATCTGGGGCACCAGTGAAGTCTGAGCAGCCGGACAGTTGA 3162 0.4269 MSPPAEEKMEDVKPLAASANSSQGEHGDPADSRFTEFCKNGLSLDDESCRQATKLFSETKHLLQTNVSSLGNGTYEEAERYWFSFVLYCVKRLADKHTESEKEVTDSNGLTLCQILRRAKLNIVDFFKELPQFLVKGGPILSNLYGTDWENRLEAKELHANFLHLSILSKYYKRAFGEFFLVNDATEKNSAASRAGDYASQYHRFGWLVFLALRVHAFSRFKDLVTCTNGLVSILAILIIHIPARFRNFDIHDASRFVKKSSKGVDIIASLCNMYDTSEDDVRKTMEKANNLIADILKKKPCLASECETATLESIDKDGLFYFNDLMEESSLPSCLNILEKDYDDAIRNKGELDERLFINEEDSLLASGSLSGGSMSASGVKRKFDSLASPTKTITSPLSPQCSPASHHANGIPISTTSKMAATPVTTAMTTAKWLRTVICPLPSKPSPELEKFLASCDRDVSSDVVRRAQIILQAIFPSSPLGERCLTGSLQSANLMDNVWAEQRRLEALKLYYRVLEAMCRAESQILHATNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEDSLPRELRRHLNSLEERLLESMVWEKGSSMYNSLTVARPSLSSEITRLGLLAEPMPSLDAIATHINFSCGGLPPGPSLQKPETLPSQNGDIRSPKRLCTEYRSVLAERNSFTSPVKDRLLPFSNLKSKLPPPLQSAFASPTRPNPGGGGETCAETGINIFFGKIVKLAAVRISGMVERLQLSQQIRENVYRLFQQILNQRTSLFFNRHIDQIILCCFYGIAKISQLNLTFREIIYNYRKQPQCKPQVFRGVFIDWSSTRRNGVCNLIGLPLCFMKSLTLYMILEQRTGQEHVDIITFYNEIFIPSVKALLVELGPGGTTTKANRIPEANNNNDDHLAQCPGSPKISPFPSLPDMSPKKVSATHNVYVSPLRSAKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNGTRKVRGPLNFDDVDVGLVSDSMVANSLYLQNGSCASSSGAPVKSEQPDS 1053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2545g00007 1053 Gene3D - 712 923 - -
Pral2545g00007 1053 Gene3D - 202 360 - -
Pral2545g00007 1053 FunFam Retinoblastoma-related protein 1 699 857 - -
Pral2545g00007 1053 SUPERFAMILY Cyclin-like 746 941 IPR036915 -
Pral2545g00007 1053 SMART DUF3452_2 99 241 IPR024599 -
Pral2545g00007 1053 Pfam Domain of unknown function (DUF3452) 103 241 IPR024599 -
Pral2545g00007 1053 FunFam Retinoblastoma-related protein 1 202 360 - -
Pral2545g00007 1053 Gene3D - 427 615 - -
Pral2545g00007 1053 Pfam Retinoblastoma-associated protein A domain 424 625 IPR002720 GO:0005634|GO:0051726
Pral2545g00007 1053 FunFam Retinoblastoma-related protein 1 427 615 - -
Pral2545g00007 1053 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 31 1051 IPR028309 GO:0006357|GO:0051726
Pral2545g00007 1053 Pfam Retinoblastoma-associated protein B domain 748 898 IPR002719 GO:0005634|GO:0051726
Pral2545g00007 1053 Coils Coil 336 356 - -
Pral2545g00007 1053 SMART RB_A_2 424 625 IPR002720 GO:0005634|GO:0051726
Pral2545g00007 1053 MobiDBLite consensus disorder prediction 1 30 - -
Pral2545g00007 1053 SUPERFAMILY Cyclin-like 432 627 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2545g00007 Pral-Chr2545 48217 55722 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2545g00007 9 1053 Core Cell Cycle Gene Families AT3G12280 68.531 0.0 1404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Pral2545g00007 RB_A 3.4e-64 CL0065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2545g00007 K04681 - qsa:O6P43_001515 1694.48