Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2542g00003 ATGCAGGGTGATTCTTCTCCGCGCTCGATGCTCACGGAGTCTAAAGAGGATAACTTGGTCCTTTCTTCTGAGGATTCGTCTTGCCCTGATGAGTCCGAGCTTGAATTGGGTCTTGGCTTAAGCCTTTCTCATCCTCGACTCAAGTCTCAGCCTCCTCCAACGACTCAGTATGCTAGAATTTTGACTGCTATGGATTTTTCTTCCTCAGCCTCCTCCTCCGCCTCCTCTTCCTCTCCTAACGCGACAGCTGGCACCAAGAGAGCTGCTGATTCTCTTGTCGCTTCAAACGGTCCTAGTCAAGTTGTTGGATGGCCTCCTCTTCGAGCATACAGAATGAACAGCTTTAATAATAATCACTCAAAATCTCCAGCCACTGAGGCGAAGGGTAATCAAACAGCTGCAAGGAAGGCCACTGACAATGGTAGTAATAAAAACAATAGTATTGCGAAAGAAGAAGCACACATTAGGAGATCCCTGTTTGTGAAGGTAAATATGGACGGGACACCTATTGGAAGGAAGGTTGATTTGAGTGCTCATGGTTCCTATGAAAACTTGGCGCGTGCTTTGGAGGATATGTTTAACGAACCGGCTACCAAAGGATTAAATGGGGAGGATCGTGGTATTGTCGTTGGAGCAAAAAAGAGACACTTAAACTTGCTGGATGAATCTTCCAATTTCGTGCTGACTTACGAAGACAAAGAAGGAGACTGGATGCTTGTTGGAGATGTTCCTTGGGATATGTTTCTCAATTCTGTGAGGAGGCTTAGAATTATGAGGACGTCTGAGGCAAATGGACTTGCGCCAAGACTGGAGGAGAAGAAGAGCAGACTGAGAAGTTAG 840 0.4619 MQGDSSPRSMLTESKEDNLVLSSEDSSCPDESELELGLGLSLSHPRLKSQPPPTTQYARILTAMDFSSSASSSASSSSPNATAGTKRAADSLVASNGPSQVVGWPPLRAYRMNSFNNNHSKSPATEAKGNQTAARKATDNGSNKNNSIAKEEAHIRRSLFVKVNMDGTPIGRKVDLSAHGSYENLARALEDMFNEPATKGLNGEDRGIVVGAKKRHLNLLDESSNFVLTYEDKEGDWMLVGDVPWDMFLNSVRRLRIMRTSEANGLAPRLEEKKSRLRS 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2542g00003 279 ProSiteProfiles PB1 domain profile. 158 262 IPR000270 GO:0005515
Pral2542g00003 279 MobiDBLite consensus disorder prediction 1 37 - -
Pral2542g00003 279 MobiDBLite consensus disorder prediction 69 85 - -
Pral2542g00003 279 MobiDBLite consensus disorder prediction 116 146 - -
Pral2542g00003 279 SUPERFAMILY CAD & PB1 domains 155 258 - -
Pral2542g00003 279 MobiDBLite consensus disorder prediction 1 27 - -
Pral2542g00003 279 Gene3D - 153 272 - -
Pral2542g00003 279 Pfam AUX/IAA family 60 269 IPR033389 -
Pral2542g00003 279 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 33 265 IPR003311 GO:0005634|GO:0006355
Pral2542g00003 279 FunFam Auxin-responsive protein 153 270 - -
Pral2542g00003 279 MobiDBLite consensus disorder prediction 69 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2542g00003 Pral-Chr2542 7775 11013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2542g00003 162 269 B3 DNA Binding Superfamily AT1G59750 33.333 5.69e-14 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pral2542g00003 AUX_IAA 5.6e-63 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2542g00003 K14484 - gmx:100779400 330.872