Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2540g00002 ATGGGCGACATGAAGGATAAATTTAAGACTTTCATGAAGAAAGTCTCTCCATCACCCTCCGGTAAATTCAAGGGTCAAGGAAGAGTTCTAGGATCGTCCTTATCTCCATCTTCATCTTCTCCATCCAGTAGTTCTATTCTTCTCCGTCCTCCTCAGAATTCGGGTCCAAAACCAGGCTCTGCATCGGCGAACTCTCGACCGTTACCCCAGAAAACGATCGATTCGGAGTCGAATAGGAAGGAAGGCTCGAGTAAGTCAAATCCTGATCGCAAACCGGCGGACGGGTTTGACCCTTACGATTCATTGATAACTACGGGGAAGAGATCTAAAAATGGCTGTTCTTTGGATGTGTATGAATGTCCCATATGTGGGCTATCGTTTAGGTCCGAGGAAGAGGTGTCTATACATGTGGATACCTGTCAAGGTAACCCAGTTGAGCCTGATGACGGAAATGGTGTCTCACAATTACCTGACAATGGAGTTCAGTCAAGAACTGAATTGGAGGCTTGCATCAGCATGTATATGTCAGGGAAGCCATCTGAGGGTTCAGTTGAAGTTGTCCTCAAACTGTTGAGGAATATTGTGAAGGAACCAGATAACGCGAAGTATAGGAAAATTAGGCTGACTAATCCAAAGATAAAAGAGGCTGTTAGTGAGGTTGCAGGAGGAGTTGAGCTGCTGAACTATGTAGGATTTGAGCTAAAGGAGGAGGATGGGGAGAGATGGGCAGTGATGGAAGTTCCTATAGAAGATCAAATGAAATTGATGAAGGAGGCAATAGTATTATTGGAATCAACAGTACTACAAGAACCTGCAAAGAGAGACAATTTGGCATCTGAAACATGTGCTGAGATGGATGAAGAGGCAGAACCGAAAAAGGTGGACAGAGAGGTAAAGGTCTTCTTTGCTGTACCAGAAAGCATTGCGGCAAAGATTGAGCTACCAGATTCTTTCTATAACCTTTCAATTGACGAGGTGAAAAGAGAAGCTGAACTAAGGAGGAAAAAAATTGCGGAGTCTCAGCTTTTAATCCCCAAGTCACTAAAAGAAAAGCAAGCAAAAGCTGCTAGGAGGAAATACAGAAAAGCTATGATTCGGATCCAGTTTCCAGATGGAGTAGTGCTTCAAGGTGTATTTAATCCATGGGAACCAACAACTGCTTTATATGAGTTCGCCAGCTCCGCATTGAAAGAACCAAGTTTGGAATATGACCTAATGCATCCTGTACTTGTTCAACGACGGGTAATCCCTCATTTAGCCAGAGCAGGGGAGAAAGCCGTAACACTAGAGGACGAGGATCTGGTGCCTTCAGCTCTTATTAAGTTGAAACCTCATGAAACGGATTCTGTTGTTTACACAGGCCTCAGAAATGAATTGCTTGAAATCAGTGAACCTCTCTCATGA 1404 0.4387 MGDMKDKFKTFMKKVSPSPSGKFKGQGRVLGSSLSPSSSSPSSSSILLRPPQNSGPKPGSASANSRPLPQKTIDSESNRKEGSSKSNPDRKPADGFDPYDSLITTGKRSKNGCSLDVYECPICGLSFRSEEEVSIHVDTCQGNPVEPDDGNGVSQLPDNGVQSRTELEACISMYMSGKPSEGSVEVVLKLLRNIVKEPDNAKYRKIRLTNPKIKEAVSEVAGGVELLNYVGFELKEEDGERWAVMEVPIEDQMKLMKEAIVLLESTVLQEPAKRDNLASETCAEMDEEAEPKKVDREVKVFFAVPESIAAKIELPDSFYNLSIDEVKREAELRRKKIAESQLLIPKSLKEKQAKAARRKYRKAMIRIQFPDGVVLQGVFNPWEPTTALYEFASSALKEPSLEYDLMHPVLVQRRVIPHLARAGEKAVTLEDEDLVPSALIKLKPHETDSVVYTGLRNELLEISEPLS 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2540g00002 467 Pfam PUB domain 181 256 IPR018997 -
Pral2540g00002 467 ProSiteProfiles UBX domain profile. 358 442 IPR001012 GO:0005515
Pral2540g00002 467 CDD PUB 176 265 - -
Pral2540g00002 467 MobiDBLite consensus disorder prediction 73 96 - -
Pral2540g00002 467 MobiDBLite consensus disorder prediction 1 103 - -
Pral2540g00002 467 SUPERFAMILY PUG domain-like 177 264 IPR036339 -
Pral2540g00002 467 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 466 - -
Pral2540g00002 467 Gene3D - 352 445 - -
Pral2540g00002 467 SMART PGNneu 182 249 - -
Pral2540g00002 467 SUPERFAMILY Ubiquitin-like 329 442 IPR029071 -
Pral2540g00002 467 MobiDBLite consensus disorder prediction 30 72 - -
Pral2540g00002 467 FunFam UBX domain-containing protein 6 352 443 - -
Pral2540g00002 467 Gene3D - 175 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2540g00002 Pral-Chr2540 1801 32506 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2540g00002 1 390 C2H2 Transcription Factor Family AT2G01650 55.808 1.80e-142 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral2540g00002 PUB 8.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2540g00002 K14011 - qsa:O6P43_025896 592.038