Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2538g00019 ATGAATGGTGGTGTGGAACCGCAAGTGCAAGTAGGAGATTTCTTTGAAGAAGAAGAAGAAACAGTTATGGCGGCGGTTAAAGAGCGAGAGATCTGGCTTCAGAACAATAATGGTGGCCATCAAGGTGATGAGGATGATCTTCTTGCTGGTGTAATGGACGACGCTTCTCTGTTCTATGCAGATGATGACTTCCCTTGTCTTCCAGATTTCTCATGCATGTCGTCTTCTTCGTCTTCATCTTCACCCCCAGCAGTCACAGTCAAAACCGTCACGTGCGCCTCTTCCTCCTCTAATACGTCGTCGTCTAATTTGGCGGCTTCCTGGGCGAATCTCAAGTCAGATGCAGAGCTTCGTCTCCCACCGCCACAGACCCAGCCACCGGCGTTATCCTCCACTGCTTCTATGGAGATCCAGCAGCCGCCGGATCATCAAGGCGGCACTAATGACAGCGGAGATTGTCTGGACATGATGGACACATTTGGAACTATGGAACTCATGGAGGGAAATGAATTCTTCGATCCTTCATCAATCTTTGAAAATGAAGAGAATCTATTGGACGAATTTGTCCAGTGGGACCCGAATCCGCCGGAAGAGGGACATGCAAGTGGTGGAATGATACTGCAGGAGGAACATCAACAGCAGCAGCAGCAACAGCCACCGCCATTGGCGGAGACGGCGACGGATGAAGAGATGAGCTCGGTGTTCTTGGAATGGCTAAAGATAAACAAAGACAGCGTGTCTGCGACTGATTTGAGGAACGTGAGGTTGAAGAAGGCGACAATAGAGTGTGCAGCGAAGCGTCTTGGTGGAGGGAAAGAAGGCATGAAGCAATTGTTGAAGCTAATTCTGGAATGGGTTCAGACGAGCCATCTTCAGAAGAAAAGACGCCTGGAAAATCATGTTAATAACAATAATGAGAATGACAATCTTTTCACCACTCATTTTCTGGATACCACAAACCCTAGCTCTAATCTCAACCACCAACCTTCATTTGGCCTGGAATGGATCTCTCAGCCGCCGTACGGGGTTGATCCAGCGGCTTTACCGGCGGCCCCGCCACCATTTCCGCAACCTCTAGTTGGTTATAGCAATAACCTGGGAGACCCGTTTTCCAACGGAGCTTCAAATGAATTTCATGCGCCGGATTCTTCACATTCATGGCCTCATTCGCAGTTTACTGTTTATACTAACCACCAACCATATGGGAACAATAATCTACACCCGTCGGCGATGGCGGGATTTGGCGGTTATGGGAACAATCAGTACCCGTATCAGTATTTTCATGGCGGCGGCGGCGGCCCAGATAGATTGGGTCCGTTGGCGACAAAAGAAGCGAGGAAGAAGAGAATGGCGAGGCAGAGACGGCATTTATCTCATCACAGGCATCACAATAATGTCCAAGACCATCAACAAAACCAGCAGAGCCCAACCAGTGATTATTACACTACTGCTACAGTTGTACCGCATGCAAATCCACCCAACTGGTTGTATTGGCCGCCGGCGGCGCCGTCTAACGGTGGAGCCGCTTCTGTTGTGCCAACGTCTCAGGCGGAGCCACCACCGCCGGGGAGAAATGTGGGGGATCGGATGGCGGCCATGCAATCCGACCAGAATAATAATCAACAAAACCGGGTCTCATCAGATAAACGACAGGGATGGAAACCAGAGAAGAACTTGAAGTTCCTTCTGCAGAAAGTGTTAAAGCAAAGCGACGTGGGTAATCTGGGGAGGATAGTGTTGCCAAAGAGAGAAGCAGAAACCCATTTGCCAGAACTGGAGGAAAGAGATGGGATTTCCATAGCAATGGAAGACATTGGAACTTGTCGTGTTTGGAACATGCGCTATAGATACTGGCCAAACAACAAAAGCAGGATGTATCTGCTTGAGAATACAGGAGATTTTGTGAGAGCCAATGGACTTCAAGAAGGAGACTTCATAGTGATATATTCAGATGTAAAATGTGGCAAATATATGATAAGGGGTGTGAAGGTAAGGCAAGCAGCTGGCACCAAAGTTGAGACGAAGAAAGCAGCCTCAGGAAAATGCCAGAAGGCTAATGGATCTGATACATTTTCACCAAACAAGAATGAGAGAACAAGGCAATAA 2106 0.4839 MNGGVEPQVQVGDFFEEEEETVMAAVKEREIWLQNNNGGHQGDEDDLLAGVMDDASLFYADDDFPCLPDFSCMSSSSSSSSPPAVTVKTVTCASSSSNTSSSNLAASWANLKSDAELRLPPPQTQPPALSSTASMEIQQPPDHQGGTNDSGDCLDMMDTFGTMELMEGNEFFDPSSIFENEENLLDEFVQWDPNPPEEGHASGGMILQEEHQQQQQQQPPPLAETATDEEMSSVFLEWLKINKDSVSATDLRNVRLKKATIECAAKRLGGGKEGMKQLLKLILEWVQTSHLQKKRRLENHVNNNNENDNLFTTHFLDTTNPSSNLNHQPSFGLEWISQPPYGVDPAALPAAPPPFPQPLVGYSNNLGDPFSNGASNEFHAPDSSHSWPHSQFTVYTNHQPYGNNNLHPSAMAGFGGYGNNQYPYQYFHGGGGGPDRLGPLATKEARKKRMARQRRHLSHHRHHNNVQDHQQNQQSPTSDYYTTATVVPHANPPNWLYWPPAAPSNGGAASVVPTSQAEPPPPGRNVGDRMAAMQSDQNNNQQNRVSSDKRQGWKPEKNLKFLLQKVLKQSDVGNLGRIVLPKREAETHLPELEERDGISIAMEDIGTCRVWNMRYRYWPNNKSRMYLLENTGDFVRANGLQEGDFIVIYSDVKCGKYMIRGVKVRQAAGTKVETKKAASGKCQKANGSDTFSPNKNERTRQ 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2538g00019 701 MobiDBLite consensus disorder prediction 447 463 - -
Pral2538g00019 701 MobiDBLite consensus disorder prediction 117 155 - -
Pral2538g00019 701 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 227 675 IPR044800 GO:0003700
Pral2538g00019 701 MobiDBLite consensus disorder prediction 446 478 - -
Pral2538g00019 701 Pfam B3 DNA binding domain 564 660 IPR003340 GO:0003677
Pral2538g00019 701 CDD BfiI_C_EcoRII_N_B3 561 662 - -
Pral2538g00019 701 SMART B3_2 563 665 IPR003340 GO:0003677
Pral2538g00019 701 MobiDBLite consensus disorder prediction 673 701 - -
Pral2538g00019 701 FunFam B3 domain-containing transcription factor FUS3 559 674 - -
Pral2538g00019 701 MobiDBLite consensus disorder prediction 128 146 - -
Pral2538g00019 701 MobiDBLite consensus disorder prediction 209 223 - -
Pral2538g00019 701 MobiDBLite consensus disorder prediction 497 529 - -
Pral2538g00019 701 MobiDBLite consensus disorder prediction 534 553 - -
Pral2538g00019 701 MobiDBLite consensus disorder prediction 534 548 - -
Pral2538g00019 701 ProSiteProfiles B3 DNA-binding domain profile. 563 665 IPR003340 GO:0003677
Pral2538g00019 701 SUPERFAMILY DNA-binding pseudobarrel domain 562 657 IPR015300 -
Pral2538g00019 701 Gene3D - 559 678 IPR015300 -
Pral2538g00019 701 MobiDBLite consensus disorder prediction 209 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2538g00019 Pral-Chr2538 140278 142870 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2538g00019 412 680 B3 DNA Binding Superfamily AT3G24650 60.638 1.68e-92 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pral2538g00019 B3 3.2e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2538g00019 K09287 - gmx:100795226 605.134