Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2538g00006 ATGGTTGTGATCCAACCGGAAGAAACTGAGACTGAACGGAAAGTCGTGAATCCCTCTGAATCTGCAAAAACTGCAAAATCGTCAGCTTCCTCCCATGTCGATGACCATAAAGAAGCTTCCGATGGCTTTGAAACGGCCAGTGACACCGAGCTCGGAAGCGACGCAGAGGATACGCATAATGAACGGGGACAACAACATCAAGATCAGGAGGTGGGGATTCCTCCGGGCACTGAGTCTTCCGAAGAGGCATCACAGGACGAGGAATTGAAACAGCAGAAAGCATTGGCTCAAGCGAATGATGCAAAATTAGAAGGAAATAAGCTATTTGGGGATGCACGATTTGAGGAGGCATTATCAAAGTATGAACTTGCTTTACAAATTGCCCCAGACATGCCTTCATCTGTTGAAGTACGCTCAATATGCCATTCAAATCGTGCTGTATGCTTTATGAAATTGGGGAAATATGAGGACACAATCAAAGAGTGCACTAAGGCATTGGAACTCAATCCTGCATATCTGAAAGCTCTGGTGAGAAGAGGCGAGGCACATGAAAAACTTGAGCATTTTGAAGAGGCCATTGCTGATATGAAAAAGATCATAGAAATTGATCCCTCAAATGATCAAGCTAGGAGAACCATCCGGAGATTGGAACCCCTGGCAGCAGAAAAGCGGGAAAAGATGAAGGAAGAAATGATCGGTAAGCTGAAAGACATGGGCAATTCTTTGTTGGGCCGCTTTGGGATGAGCGTTGACAACTTTAAAGCTGTTCAAGATCCGAACACTGGTTCCTATTCCATCTCATTCCAACGCTAA 813 0.4514 MVVIQPEETETERKVVNPSESAKTAKSSASSHVDDHKEASDGFETASDTELGSDAEDTHNERGQQHQDQEVGIPPGTESSEEASQDEELKQQKALAQANDAKLEGNKLFGDARFEEALSKYELALQIAPDMPSSVEVRSICHSNRAVCFMKLGKYEDTIKECTKALELNPAYLKALVRRGEAHEKLEHFEEAIADMKKIIEIDPSNDQARRTIRRLEPLAAEKREKMKEEMIGKLKDMGNSLLGRFGMSVDNFKAVQDPNTGSYSISFQR 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2538g00006 270 MobiDBLite consensus disorder prediction 29 44 - -
Pral2538g00006 270 Pfam Tetratricopeptide repeat 141 171 IPR001440 GO:0005515
Pral2538g00006 270 ProSiteProfiles TPR repeat profile. 139 172 IPR019734 GO:0005515
Pral2538g00006 270 Gene3D Tetratricopeptide repeat domain 58 234 IPR011990 GO:0005515
Pral2538g00006 270 SUPERFAMILY TPR-like 98 216 IPR011990 GO:0005515
Pral2538g00006 270 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 12 270 - -
Pral2538g00006 270 ProSiteProfiles TPR repeat profile. 173 206 IPR019734 GO:0005515
Pral2538g00006 270 SMART tpr_5 98 131 IPR019734 GO:0005515
Pral2538g00006 270 SMART tpr_5 139 172 IPR019734 GO:0005515
Pral2538g00006 270 SMART tpr_5 173 206 IPR019734 GO:0005515
Pral2538g00006 270 MobiDBLite consensus disorder prediction 1 92 - -
Pral2538g00006 270 Pfam Tetratricopeptide repeat 174 206 IPR013105 -
Pral2538g00006 270 MobiDBLite consensus disorder prediction 52 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2538g00006 Pral-Chr2538 65972 69740 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2538g00006 63 229 Calmodulin-binding Proteins AT3G25230 30.978 8.44e-15 72.0