Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2538g00005 ATGGTTGTGATCCAACCGGAAGAAACTGAGACTGAACGGAAAGTCGTGAATCCCTCTGAATCTGCAAAAACTGCAAAATCGTCAGCTTCCTCCCATGTCGATGACCATAAAGAAGCTTCCGATGGCTTTGAAACGGCCAGTGACACCGAGCTCGGAAGCGACGCAGAGGATACGCATAATGAACGGGGACAACAACATCAAGATCAGGAGGTGGGGATTCCTCCGGGCACTGAGTCTTCCGAAGAGGCATCACAGGACGAGGAATTGAAACAGAAAGCATTGGCTCAAGCGAATGATGCAAAATTAGAAGGAAATAAGCTATTTGGGGATGCACGATTTGAGGAGGCATTATCAAAGTATGAACTTGCTTTACAAATTGCCCCAGACATGCCTTCATCTGTTGAAGTACGCTCAATATGCCATTCAAATCGTGCTGTATGCTTTATGAAATTGGGGAAATATGAGGACACAATCAAAGAGTGCACTAAGGCATTGGAACTCAATCCTGCATATCTGAAAGCTCTGGTGAGAAGAGGCGAGGCACATGAAAAACTTGAGCATTTTGAAGAGGCCATTGCTGATATGAAAAAGATCATAGAAATTGATCCCTCAAATGATCAAGCTAGGAGAACCATCCGGAGATTGGAACCCCTGGCAGCAGAAAAGCGGGAAAAGATGAAGGAAGAAATGATCGGTAAGCTGAAAGACATGGGCAATTCTTTGTTGGGCCGCTTTGGGATGAGCGTTGACAACTTTAAAGCTGTTCAAGATCCGAACACTGGTTCCTATTCCATCTCATTCCAACGCTAA 810 0.4506 MVVIQPEETETERKVVNPSESAKTAKSSASSHVDDHKEASDGFETASDTELGSDAEDTHNERGQQHQDQEVGIPPGTESSEEASQDEELKQKALAQANDAKLEGNKLFGDARFEEALSKYELALQIAPDMPSSVEVRSICHSNRAVCFMKLGKYEDTIKECTKALELNPAYLKALVRRGEAHEKLEHFEEAIADMKKIIEIDPSNDQARRTIRRLEPLAAEKREKMKEEMIGKLKDMGNSLLGRFGMSVDNFKAVQDPNTGSYSISFQR 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2538g00005 269 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 1 12 269 - -
Pral2538g00005 269 MobiDBLite consensus disorder prediction 29 44 - -
Pral2538g00005 269 Gene3D Tetratricopeptide repeat domain 57 233 IPR011990 GO:0005515
Pral2538g00005 269 MobiDBLite consensus disorder prediction 1 90 - -
Pral2538g00005 269 SUPERFAMILY TPR-like 96 215 IPR011990 GO:0005515
Pral2538g00005 269 Pfam Tetratricopeptide repeat 173 205 IPR013105 -
Pral2538g00005 269 ProSiteProfiles TPR repeat profile. 172 205 IPR019734 GO:0005515
Pral2538g00005 269 ProSiteProfiles TPR repeat profile. 138 171 IPR019734 GO:0005515
Pral2538g00005 269 MobiDBLite consensus disorder prediction 52 66 - -
Pral2538g00005 269 SMART tpr_5 138 171 IPR019734 GO:0005515
Pral2538g00005 269 SMART tpr_5 97 130 IPR019734 GO:0005515
Pral2538g00005 269 SMART tpr_5 172 205 IPR019734 GO:0005515
Pral2538g00005 269 Pfam Tetratricopeptide repeat 140 170 IPR001440 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2538g00005 Pral-Chr2538 65972 69740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2538g00005 97 228 Calmodulin-binding Proteins AT3G25230 36.429 2.17e-14 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2538g00005 K24926 - qsa:O6P43_022248 375.941