Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pral2534g00002 | ATGGCGGAGCTTGAGAATCCATCGTCAATGGCAGTTTCTGCAGCTTCCGGAGAAGCTAGCTTTTCGTCACCTGGACTTCAGAACGCGACTGATGAACTCCCTCCCCCGAAAAAGAAGCGGAACCTCCCTGGAATGCCGGATCCAGATGCCGAGGTGATTGCTTTATCGCCCAAAACACTGTTGGCGACGAACCGTTTCGTATGTGAGATCTGCAATAAAGGATTTCAACGGGACCAAAACCTGCAACTTCATCGACGTGGCCACAACCTGCCATGGAAACTGCGGCAGCGAACCACCAAGGATGTTCGTAAGAGAGTCTACGTGTGCCCCGAGCCTTCTTGTGTCCATCATAATCCGTCGAGGGCGCTCGGTGATCTCACCGGCATCAAGAAGCATTTTTGTAGGAAACACGGCGAAAAGAAGTGGAAATGTGAGCGATGCTCCAAGAAATACGCCGTACAGTCCGATTGGAAGGCCCATATGAAGACTTGTGGAACTAAAGAGTACAAATGTGACTGTGGCACCTTATTCTCTAGGAGGGATAGCTTCATCACGCACAGGGCCTTTTGCGATGCGTTGGCGGAAGAAAGCGCCAGAACCCGAACCCTAACCATTGGAGAAGGCTCCGAGGGGAATTCGAATGGGAAGGTTGCTATGGCTTCGCCGCCGCAGCCTCCACTGACCCCGTCAACGTCTGTGGTGTCTCCTGCTATGTCCATTCAGAGCTCAGTCTCGGAAAACCCAATCAGGTTGTCACCACCGTCCTCGAACGTAACGTGTTTACCAGCACCCACAGTCACAAACAGTGCTCCCTCCAGCTCGACCAGTGTTTTCGCCAGCATATTTGCATCCTCAAATCCTGCTCCTTCTCAGACATCTTCATCGTATTCCAGTATGATGTCAAGCATGGCTCGCTCGGATTGCCCGACTACTACCCCAACGCTGTCTGCAATAGAGCCCACATCTCTGTCTCTCTCCACTTCGCTTTATCTCTCCAATAATGACTCATCCTTGTTCCCGGACCAACACGACCCTCGCCACTATACTGCACCTCCTCAGCCTGCACTGTCCGCCACCGCATTACTCCAAAAGGCAGCTCAAATGGGTGCCGCTGCGTCCAATGCATCTTTGCTTCGAGGTTTAGGATTAGCAACAGCAACTTCCTTGGCACAAAACGATGGTACCTCGACGCAATGGAATAGCCGTGTAAAGACAGAGAATCACTCATTAACTGATGATGGCCTGGTCCTTGGAATTCCTTCTGCTGGCAATACGGGTTTTGCCGACTTGATGATGGGCTCGTCGTCGTCGCCGTTCGGGGGACAGCCGATGACTCGAGATCTTCTTGGTCTAAGCATAGGTGGTGCTGGTGGCGGGGCCAGCAGCAGGGGCGGTCTTTCTGCCTTGCTTACCTCTTTTGGTGGTAGATTTGATGTTGCAGATTCGTCGACGGGAGGGAGGAATGCTTCGGCTGAAGACTAG | 1482 | 0.5256 | MAELENPSSMAVSAASGEASFSSPGLQNATDELPPPKKKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTTKDVRKRVYVCPEPSCVHHNPSRALGDLTGIKKHFCRKHGEKKWKCERCSKKYAVQSDWKAHMKTCGTKEYKCDCGTLFSRRDSFITHRAFCDALAEESARTRTLTIGEGSEGNSNGKVAMASPPQPPLTPSTSVVSPAMSIQSSVSENPIRLSPPSSNVTCLPAPTVTNSAPSSSTSVFASIFASSNPAPSQTSSSYSSMMSSMARSDCPTTTPTLSAIEPTSLSLSTSLYLSNNDSSLFPDQHDPRHYTAPPQPALSATALLQKAAQMGAAASNASLLRGLGLATATSLAQNDGTSTQWNSRVKTENHSLTDDGLVLGIPSAGNTGFADLMMGSSSSPFGGQPMTRDLLGLSIGGAGGGASSRGGLSALLTSFGGRFDVADSSTGGRNASAED | 493 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pral2534g00002 | 493 | Gene3D | Classic Zinc Finger | 120 | 200 | - | - | |
Pral2534g00002 | 493 | SMART | c2h2final6 | 66 | 88 | IPR013087 | - | |
Pral2534g00002 | 493 | SMART | c2h2final6 | 107 | 137 | IPR013087 | - | |
Pral2534g00002 | 493 | SMART | c2h2final6 | 142 | 162 | IPR013087 | - | |
Pral2534g00002 | 493 | FunFam | protein indeterminate-domain 12-like | 45 | 113 | - | - | |
Pral2534g00002 | 493 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 120 | 199 | - | - | |
Pral2534g00002 | 493 | MobiDBLite | consensus disorder prediction | 205 | 219 | - | - | |
Pral2534g00002 | 493 | MobiDBLite | consensus disorder prediction | 9 | 29 | - | - | |
Pral2534g00002 | 493 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 20 | 459 | IPR031140 | - | |
Pral2534g00002 | 493 | MobiDBLite | consensus disorder prediction | 205 | 234 | - | - | |
Pral2534g00002 | 493 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 66 | 88 | IPR013087 | - | |
Pral2534g00002 | 493 | Pfam | Zinc-finger of C2H2 type | 66 | 88 | - | - | |
Pral2534g00002 | 493 | Gene3D | Classic Zinc Finger | 46 | 111 | - | - | |
Pral2534g00002 | 493 | MobiDBLite | consensus disorder prediction | 1 | 48 | - | - | |
Pral2534g00002 | 493 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 68 | 88 | IPR013087 | - | |
Pral2534g00002 | 493 | SUPERFAMILY | beta-beta-alpha zinc fingers | 65 | 163 | IPR036236 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pral2534g00002 | Pral-Chr2534 | 14290 | 17386 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pral2534g00002 | 13 | 472 | IDZ Gene Family | AT5G66730 | 53.000 | 2.78e-147 | 429 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Pral2534g00002 | zf-met | 0.0035 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pral2534g00002 | K25869 | - | qsa:O6P43_018833 | 642.884 |