Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2534g00002 ATGGCGGAGCTTGAGAATCCATCGTCAATGGCAGTTTCTGCAGCTTCCGGAGAAGCTAGCTTTTCGTCACCTGGACTTCAGAACGCGACTGATGAACTCCCTCCCCCGAAAAAGAAGCGGAACCTCCCTGGAATGCCGGATCCAGATGCCGAGGTGATTGCTTTATCGCCCAAAACACTGTTGGCGACGAACCGTTTCGTATGTGAGATCTGCAATAAAGGATTTCAACGGGACCAAAACCTGCAACTTCATCGACGTGGCCACAACCTGCCATGGAAACTGCGGCAGCGAACCACCAAGGATGTTCGTAAGAGAGTCTACGTGTGCCCCGAGCCTTCTTGTGTCCATCATAATCCGTCGAGGGCGCTCGGTGATCTCACCGGCATCAAGAAGCATTTTTGTAGGAAACACGGCGAAAAGAAGTGGAAATGTGAGCGATGCTCCAAGAAATACGCCGTACAGTCCGATTGGAAGGCCCATATGAAGACTTGTGGAACTAAAGAGTACAAATGTGACTGTGGCACCTTATTCTCTAGGAGGGATAGCTTCATCACGCACAGGGCCTTTTGCGATGCGTTGGCGGAAGAAAGCGCCAGAACCCGAACCCTAACCATTGGAGAAGGCTCCGAGGGGAATTCGAATGGGAAGGTTGCTATGGCTTCGCCGCCGCAGCCTCCACTGACCCCGTCAACGTCTGTGGTGTCTCCTGCTATGTCCATTCAGAGCTCAGTCTCGGAAAACCCAATCAGGTTGTCACCACCGTCCTCGAACGTAACGTGTTTACCAGCACCCACAGTCACAAACAGTGCTCCCTCCAGCTCGACCAGTGTTTTCGCCAGCATATTTGCATCCTCAAATCCTGCTCCTTCTCAGACATCTTCATCGTATTCCAGTATGATGTCAAGCATGGCTCGCTCGGATTGCCCGACTACTACCCCAACGCTGTCTGCAATAGAGCCCACATCTCTGTCTCTCTCCACTTCGCTTTATCTCTCCAATAATGACTCATCCTTGTTCCCGGACCAACACGACCCTCGCCACTATACTGCACCTCCTCAGCCTGCACTGTCCGCCACCGCATTACTCCAAAAGGCAGCTCAAATGGGTGCCGCTGCGTCCAATGCATCTTTGCTTCGAGGTTTAGGATTAGCAACAGCAACTTCCTTGGCACAAAACGATGGTACCTCGACGCAATGGAATAGCCGTGTAAAGACAGAGAATCACTCATTAACTGATGATGGCCTGGTCCTTGGAATTCCTTCTGCTGGCAATACGGGTTTTGCCGACTTGATGATGGGCTCGTCGTCGTCGCCGTTCGGGGGACAGCCGATGACTCGAGATCTTCTTGGTCTAAGCATAGGTGGTGCTGGTGGCGGGGCCAGCAGCAGGGGCGGTCTTTCTGCCTTGCTTACCTCTTTTGGTGGTAGATTTGATGTTGCAGATTCGTCGACGGGAGGGAGGAATGCTTCGGCTGAAGACTAG 1482 0.5256 MAELENPSSMAVSAASGEASFSSPGLQNATDELPPPKKKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTTKDVRKRVYVCPEPSCVHHNPSRALGDLTGIKKHFCRKHGEKKWKCERCSKKYAVQSDWKAHMKTCGTKEYKCDCGTLFSRRDSFITHRAFCDALAEESARTRTLTIGEGSEGNSNGKVAMASPPQPPLTPSTSVVSPAMSIQSSVSENPIRLSPPSSNVTCLPAPTVTNSAPSSSTSVFASIFASSNPAPSQTSSSYSSMMSSMARSDCPTTTPTLSAIEPTSLSLSTSLYLSNNDSSLFPDQHDPRHYTAPPQPALSATALLQKAAQMGAAASNASLLRGLGLATATSLAQNDGTSTQWNSRVKTENHSLTDDGLVLGIPSAGNTGFADLMMGSSSSPFGGQPMTRDLLGLSIGGAGGGASSRGGLSALLTSFGGRFDVADSSTGGRNASAED 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2534g00002 493 Gene3D Classic Zinc Finger 120 200 - -
Pral2534g00002 493 SMART c2h2final6 66 88 IPR013087 -
Pral2534g00002 493 SMART c2h2final6 107 137 IPR013087 -
Pral2534g00002 493 SMART c2h2final6 142 162 IPR013087 -
Pral2534g00002 493 FunFam protein indeterminate-domain 12-like 45 113 - -
Pral2534g00002 493 FunFam protein indeterminate-domain 5, chloroplastic-like 120 199 - -
Pral2534g00002 493 MobiDBLite consensus disorder prediction 205 219 - -
Pral2534g00002 493 MobiDBLite consensus disorder prediction 9 29 - -
Pral2534g00002 493 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 459 IPR031140 -
Pral2534g00002 493 MobiDBLite consensus disorder prediction 205 234 - -
Pral2534g00002 493 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Pral2534g00002 493 Pfam Zinc-finger of C2H2 type 66 88 - -
Pral2534g00002 493 Gene3D Classic Zinc Finger 46 111 - -
Pral2534g00002 493 MobiDBLite consensus disorder prediction 1 48 - -
Pral2534g00002 493 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Pral2534g00002 493 SUPERFAMILY beta-beta-alpha zinc fingers 65 163 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2534g00002 Pral-Chr2534 14290 17386 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2534g00002 13 472 IDZ Gene Family AT5G66730 53.000 2.78e-147 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral2534g00002 zf-met 0.0035 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2534g00002 K25869 - qsa:O6P43_018833 642.884