Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral252g00007 ATGAGAGTGGTGAGATACCTCAAGGGCTGTCCAGGACTTGGGATCAAGATTGTAGCAAATAAGGATGCTCAACTGGAATGCTATGTAGATGCAGATTGGGGAACATGTCCAGATACTAGGAGGTCTGTAACAGGATATGTAGTGAAATTTGGAGGATCACCAATATCCTGGAAGTCAAAGAAACAGAACACGATCTCCAAATCATCTACAGAGGCAGAGTACAGAGCACTAAGCAGTGTTGTTTTAGAGATCGTGTGGGTCAAAAGGCTACTGGAAGATCTTGGATTTACTAATTTAAAGCTGGTACAATTGTTTTGTGACATTCCTTTCATTATTTGCACTCCTCTGAGACGGAGGAACAAAGACAAGTGGGTTTGCGAGGTTCGTGTGCCGAACGGTAACACCAGGATTTGGCTCGGAACATATTCCACGGTGGAGATGGCCGCTCGTGCTCATGACGTGGCGGCTCTGGCTCTTCGTGGTAAATCGGCTTGCCTGAATTTCGCTGACTCAGCTTGGCGGTTGCCTCTACCGGAATCAACCAATGCGGCGGAGATCAGACGGGTGGCGGCTCTGGCTGCTGAGGAATTCGGCAGGAGTGGTGATGATTTTGAAGTTTGCAGTCTCAGTAGTACAACGGCCGACGAGGAAGTCATCGGAGATGCTCCGAATGTACAGGATTATTGTGAAGAAGACGAAGCGACGTATATTTATCAAAATCCAGCTGTGTCAACGAGATTGGACGAGCTCCGTCATTTGATAGTGAGTATGGCGGAGGAGCCGCTCCGATCGCCACCCCCTCTTAGGCCGTATGGGTGGAGCTGGGATGACGTGGAGGCAGATACTGAGGTTTCACTGTGGCAATATTGA 870 0.4885 MRVVRYLKGCPGLGIKIVANKDAQLECYVDADWGTCPDTRRSVTGYVVKFGGSPISWKSKKQNTISKSSTEAEYRALSSVVLEIVWVKRLLEDLGFTNLKLVQLFCDIPFIICTPLRRRNKDKWVCEVRVPNGNTRIWLGTYSTVEMAARAHDVAALALRGKSACLNFADSAWRLPLPESTNAAEIRRVAALAAEEFGRSGDDFEVCSLSSTTADEEVIGDAPNVQDYCEEDEATYIYQNPAVSTRLDELRHLIVSMAEEPLRSPPPLRPYGWSWDDVEADTEVSLWQY 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral252g00007 289 CDD AP2 115 171 IPR001471 GO:0003700|GO:0006355
Pral252g00007 289 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 117 289 IPR045277 GO:0003700
Pral252g00007 289 SMART rav1_2 117 175 IPR001471 GO:0003700|GO:0006355
Pral252g00007 289 Gene3D AP2/ERF domain 115 170 IPR036955 GO:0003700|GO:0006355
Pral252g00007 289 Pfam AP2 domain 117 161 IPR001471 GO:0003700|GO:0006355
Pral252g00007 289 ProSiteProfiles AP2/ERF domain profile. 98 169 IPR001471 GO:0003700|GO:0006355
Pral252g00007 289 SUPERFAMILY DNA-binding domain 117 171 IPR016177 GO:0003677
Pral252g00007 289 CDD RNase_HI_RT_Ty1 26 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral252g00007 Pral-Chr252 202270 207468 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral252g00007 116 289 AP2-EREBP Transcription Factor Family AT4G25470 46.667 1.43e-40 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pral252g00007 AP2 3.2e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral252g00007 - K09286 pcin:129312011 197.593