Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral2525g00002 ATGTCTATCACTCAATGGATCAATAATATTTCGGCTTCTCCATCACCTCCAGGATTGCTAATTACCCTTTTGATACGAGGATTGCCCGTATTGGAGCTTGCAGCGATATGCTTAAATTTGACTCTTTTTCTTGTGTCTCTGTTTATTGTCACTGCCACACGGATATTGGCGTATGCCTGTCGAAATCGAATTCGTAAGAACAACACGACCGGCTGTGCAAGCCCGGCTCCTCATTGTATTGATGGGGACATGCATGACGTTCGAATCAGTAGGGGGTTCAAATTCACAGTGTTCTGCTGTTTCTATGTTCTCTTCGTGTACATTTTGGTGTTAGGATTTGATGGGGCCGCTTTAATTAGAGGAGCAGCACATGGGAAAATTGTCGACTTATCTCTTCTTTCTATGCCAGTTTCCCAGGCGTTAGCTTGGTTCATGTTAAGCTTGTCGGCTTTGCATTGCAGATTCAAGGTGTCTGTGAAGTTTCCACTTTTGTTGAGGGTTTGGTGGTTTTTGTCCTTTGTAATTTGTTTGTGCACCGCATATGTTGATTGGAGAGAATTTTGGATGGAAGGTTCAAAGCACCTTTGCTCTCATGTTGTGGCAAATTTTGCTGTCACTCCAGCTCTTGCCTTCTTGTGTATTGTTGCGATTAGGGGTGTTACTGGTGTAAAAGTAAGCACTAACAGTGAGCTTGAAAAGCCATTGCTTCCTGATGAAGGGCCAGAGTGCCTCAAGGTTACACCTTATAGTGATGCAGGGCCTTTTAGCTTGGCTACTCTTTCTTGGCTAAACTCACTTCTTTCCGTGGGAGCAAAGAGACCACTTGAACTTAAGGACATTCCCCTTCTTGCACCGAAGGATCGAGCCAAGACCAACTACAAGGTTTTAAATGCTAACTGGGAGAGGCTGAAGAGCGAAAACCCTTATAAGCGGCCTTCACTAGCTTGGACTCTCGTCAAGTCATTCTGGAAGGAGGCAGCTTCCAATGCCATATTCGCTGCAAAACTTTTGGAGACCTTGACAACTCGGCAGTGGTATTTCGGGGTGGACATCTTGGGTATGCATATTAGGTCAGCTCTAACAGCAATGGTATATCAAAAGGGACTCAGGCTCTCAAGCTTGGCCAAGCAAAGTCACACAAGCGGGGAGATTGTTAACTACATGGCTATAGATGTTCAGAGGGTTGGGGACTACTCTTGGTATCTTCATGACATGTGGATGCTTCCTCTGCAAATTATTCTCGCCCTGGCAATTTTGTATAAGAATGTTGGGGTTGCTGCTTTTGCCGCATTGATTGCTACAATCATTTCCATTGTTGTCACCATTCCAGTGGCTAGGATACAAGAAGCTTATCAAGACAAATTAATGGCAGCTAAGGATGAGAGAATGCGGAAAACATCTGAGTGTCTCAGGAATATGAGAATTCTCAAGCTCGAGGCTTGGGAGGACAGATATCGAATAAAATTAGAGGAGATGCGTGAAGTAGAGTTCAAGTGGCTTCGGAGTGCCCTCTATGCCCAGGCTTTCATTACTTTCTTCTTCTGGAGCTCCCCTATATTTGTGTCTGCTGTCACTTTCGGCACTTCCATATTGATGGGTGGTAAGCTGACTGCAGGTAGTGTTCTTTCTGCTTTGGCTACTTTCAGGATCCTCCAAGAACCTCTAAGAAATTTTCCTGATTTAGTATCGACAATGGCTCAGACAAAAGTCTCTCTTGATCGCATCGTTGGTTTCCTGCAAGAGGAAGAATTGCAGGAAGGTGCAACTGTTAACTTGCCACGAGGCCCTTCTAACATTGCCGTAGAGATTAATGATGGAGTCTTTTGTTGGGATCCTTCTTCATCTAGACCTACTCTGTCAGGGATACATATTAAAGTGAAAAGAGGGATGCGAGTGGCTGTTTGTGGTGTGGTTGGTTCTGGGAAATCAAGTTTTCTTTCTTGCATTCTTGGAGAGATACCTAAGATTTCCGGTGATGTAAGAGTCTTTGGCTCTTCTGCGTATGTATCCCAATCAGCATGGATACAGTCAGGAAATATAAAAGAAAATATCCTCTTTGGAAGCCCGATGGACAAAGTAAAATACAAGAATGTTCTTCATGCTTGTTCACTAAAAAAGGATCTGGAACTCTTCTCACATAGTGACCAAACCATCATTGGTGATAGAGGTATAAACCTAAGTGGTGGCCAGAAGCAGAGGGTGCAGCTTGCACGAGCACTCTACCAAGATTCTGACATATATCTCCTTGATGATCCCTTTAGTGCAGTTGATGCCCATACTGGGTCAGAATTGTTTAGGGAATACATATTGACAGCACTAGCAGATAAGACAGTCATTTTTGTGACCCACCAAGTTGAGTTTCTTCCTGCTGCTGATATGATCCTGGTTCTGAAAGAAGGCCGCATCATACAAGCAGGAAAATATGATGATCTTTTACAAGCAGGAACAGATTTTGAAACTCTAGTGTCAGCTCACCATGAAGCAATAGAGGCTATGGATATTCCTAATCAATTCTCAGAAGAGTCAGATGAAAATTTGTCCTCGGATGCATCTGTTATGACTAATAAAAAATTGGTTCCATCAGATGTTGACAGTTTGGCAAAGGAAGTGAAAGAGGGTTCATCAGCTTCTGAAGAGAAAGCAATTAAGGTGAAGAAGAAAGCAAAATGCGCAGAAGATAAACAACTTGTTCAGGAAGAGGAGAGGGTAAGAGGTAGAATTAGCATGAAGGTGTACTTTTCGTACATGGCTGCAGCATACAAAGGCCTATTGATTCCACTCATAATCATTGCTCAAGCACTATTTCAGTTCCTTCAAATTGCCAGCAATTGGTGGATGGCTTGGGCAAATCCTCAGACCGCAGGAGAGCAACCCAAAACAACTCCTATGATTCTTCTGCTTGTTTACATGGCCCTTGCTTTTGGAAGCTCTTGGTTTATTTTTATTAGGGCTGTTCTAGTAGCAACATTCGGTCTAGCAGCTTCACAAAAGCTTTTTTTGAATATGCTTAGAAGTATTTTCCGTTCACCAATGTCTTTCTTTGACTCTACTCCAGCTGGAAGGATTTTGAATCGTGTATCAATTGATCAAAGTGTTGTGGACCTTGACATTCCTTTCAGACTGGGTGGATTTGCTTCAACGACAATCCAGCTTATTGGTATTGTTGGTGTGATGACAAAAGTCACCTGGCAAATTTTGCTTCTAATTGTCCCTATGGCTGTTTCTTGTTTGTGGATGCAGAAATACTATATGGCTTCCTCAAGGGAACTGGTTCGTATTGTAAGCATCCAGAAATCTCCAATTATAAATCTTTTTGGTGAATCAATCGGTGGAGCGACCACCATCAGAAGTTTTGGACAAGGAAAAAGGTTCATGAAGAGGAACCTCTATCTTCTAGATTGTTTTGCACGTCCTTTCTTCTGCAGTATTGCAGCTATTGAGTGGCTCTGCTTGCGCATGGAATTATTGTCAACCTTTGTGTTTGCTCTCTGCATGATATTAGTAGTGAGCTTTCCACGTGGAACTATTGACCCCAGCATGGCTGGACTTGCCGTGACATATGGACTGAATTTAAACGCACGATTATCACGGTGGATACTTAGCTTTTGCAAACTTGAAAATAAAATAATATCCATTGAAAGAATATACCAATACAGCCAAATTCCTAGTGAAGCACCAACGACTGTTGAAGAATTTCGTCCTCCATCCACATGGCCTGAGAATGGGAAAATTGAAATTGTTGATTTAAAGGTTCGTTACAAGGAGAATATGCCTTTGGTGCTTCAAGGAGTATCTTGCACATTTCCTGGTGGAAAGAAAATTGGAATAGTTGGACGGACTGGAAGTGGCAAATCCACTTTGATTCAGGCATTATTTCGATTAATTGAACCTGCAGGTGGGAGTATCTTCATAGACAACATTAATATTTCAGATATTGGCCTTCATGACCTTCGTAGCCGTCTCAGCATCATCCCACAGGATCCGACTCTATTTGAAGGTACCATCCGAGGCAACCTTGATCCTCTTGAAGAGCACTCAGATAATGAGATTTGGGAGGCGCTAGATAAGTCTCAGCTAGGAGAAATTATCCGTCAAAAGGAGCAAAAGCTTGATACACCAGTGTTAGAAAATGGAGATAATTGGAGCGTAGGACAGCGGCAACTAGTTTCTCTAGGCCGAGCTTTACTAAGGCAGGCAAAGATACTTTTTCTTGATGAAGCAACTGCATCAGTTGATACTGCCACTGATAATCTCATCCAGAAGATTATACGGACAGAATTCAAAGACTACACTGTCTGTACTATTGCACACCGTATTCCTACTGTTGTTGACAGCGATCTAGTTCTGGTACTTAGTGATGGTAGGATTGCAGAGTTTGATACCCCATCTCGACTTTTAGAGGATAAGTCGTCCATGTTTCTGAAGCTGGTGGCCGAATACTCATCACGCTCAAGTGGCATTCCAGATTTTTGA 4473 0.4268 MSITQWINNISASPSPPGLLITLLIRGLPVLELAAICLNLTLFLVSLFIVTATRILAYACRNRIRKNNTTGCASPAPHCIDGDMHDVRISRGFKFTVFCCFYVLFVYILVLGFDGAALIRGAAHGKIVDLSLLSMPVSQALAWFMLSLSALHCRFKVSVKFPLLLRVWWFLSFVICLCTAYVDWREFWMEGSKHLCSHVVANFAVTPALAFLCIVAIRGVTGVKVSTNSELEKPLLPDEGPECLKVTPYSDAGPFSLATLSWLNSLLSVGAKRPLELKDIPLLAPKDRAKTNYKVLNANWERLKSENPYKRPSLAWTLVKSFWKEAASNAIFAAKLLETLTTRQWYFGVDILGMHIRSALTAMVYQKGLRLSSLAKQSHTSGEIVNYMAIDVQRVGDYSWYLHDMWMLPLQIILALAILYKNVGVAAFAALIATIISIVVTIPVARIQEAYQDKLMAAKDERMRKTSECLRNMRILKLEAWEDRYRIKLEEMREVEFKWLRSALYAQAFITFFFWSSPIFVSAVTFGTSILMGGKLTAGSVLSALATFRILQEPLRNFPDLVSTMAQTKVSLDRIVGFLQEEELQEGATVNLPRGPSNIAVEINDGVFCWDPSSSRPTLSGIHIKVKRGMRVAVCGVVGSGKSSFLSCILGEIPKISGDVRVFGSSAYVSQSAWIQSGNIKENILFGSPMDKVKYKNVLHACSLKKDLELFSHSDQTIIGDRGINLSGGQKQRVQLARALYQDSDIYLLDDPFSAVDAHTGSELFREYILTALADKTVIFVTHQVEFLPAADMILVLKEGRIIQAGKYDDLLQAGTDFETLVSAHHEAIEAMDIPNQFSEESDENLSSDASVMTNKKLVPSDVDSLAKEVKEGSSASEEKAIKVKKKAKCAEDKQLVQEEERVRGRISMKVYFSYMAAAYKGLLIPLIIIAQALFQFLQIASNWWMAWANPQTAGEQPKTTPMILLLVYMALAFGSSWFIFIRAVLVATFGLAASQKLFLNMLRSIFRSPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLIGIVGVMTKVTWQILLLIVPMAVSCLWMQKYYMASSRELVRIVSIQKSPIINLFGESIGGATTIRSFGQGKRFMKRNLYLLDCFARPFFCSIAAIEWLCLRMELLSTFVFALCMILVVSFPRGTIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPSEAPTTVEEFRPPSTWPENGKIEIVDLKVRYKENMPLVLQGVSCTFPGGKKIGIVGRTGSGKSTLIQALFRLIEPAGGSIFIDNINISDIGLHDLRSRLSIIPQDPTLFEGTIRGNLDPLEEHSDNEIWEALDKSQLGEIIRQKEQKLDTPVLENGDNWSVGQRQLVSLGRALLRQAKILFLDEATASVDTATDNLIQKIIRTEFKDYTVCTIAHRIPTVVDSDLVLVLSDGRIAEFDTPSRLLEDKSSMFLKLVAEYSSRSSGIPDF 1490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral2525g00002 1490 SUPERFAMILY ABC transporter transmembrane region 924 1224 IPR036640 GO:0005524|GO:0016020
Pral2525g00002 1490 CDD ABC_6TM_ABCC_D2 925 1219 IPR044726 GO:0140359
Pral2525g00002 1490 Gene3D ABC transporter type 1, transmembrane domain 313 584 IPR036640 GO:0005524|GO:0016020
Pral2525g00002 1490 Gene3D ABC transporter type 1, transmembrane domain 886 1225 IPR036640 GO:0005524|GO:0016020
Pral2525g00002 1490 SUPERFAMILY ABC transporter transmembrane region 331 583 IPR036640 GO:0005524|GO:0016020
Pral2525g00002 1490 FunFam ABC transporter C family member 5 587 833 - -
Pral2525g00002 1490 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1236 1473 IPR027417 -
Pral2525g00002 1490 FunFam ABC transporter C family member 3 1227 1479 - -
Pral2525g00002 1490 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 597 823 IPR027417 -
Pral2525g00002 1490 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 601 824 IPR003439 GO:0005524
Pral2525g00002 1490 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 250 1480 - -
Pral2525g00002 1490 ProSitePatterns ABC transporters family signature. 726 740 IPR017871 GO:0005524|GO:0016887
Pral2525g00002 1490 Gene3D - 1227 1480 IPR027417 -
Pral2525g00002 1490 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 330 567 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral2525g00002 1490 CDD ABC_6TM_ABCC_D1 330 575 IPR044746 GO:0140359
Pral2525g00002 1490 Coils Coil 286 306 - -
Pral2525g00002 1490 FunFam ABC transporter C family member 10 326 583 - -
Pral2525g00002 1490 Pfam ABC transporter 1261 1409 IPR003439 GO:0005524
Pral2525g00002 1490 SMART AAA_5 1270 1463 IPR003593 GO:0016887
Pral2525g00002 1490 SMART AAA_5 628 809 IPR003593 GO:0016887
Pral2525g00002 1490 FunFam ABC transporter C family member 5 888 1225 - -
Pral2525g00002 1490 CDD ABCC_MRP_domain2 1242 1462 - -
Pral2525g00002 1490 Pfam ABC transporter transmembrane region 343 555 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral2525g00002 1490 Pfam ABC transporter transmembrane region 927 1171 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral2525g00002 1490 Pfam ABC transporter 619 753 IPR003439 GO:0005524
Pral2525g00002 1490 Gene3D - 597 829 IPR027417 -
Pral2525g00002 1490 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1244 1478 IPR003439 GO:0005524
Pral2525g00002 1490 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 927 1197 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral2525g00002 1490 CDD ABCC_MRP_domain1 601 801 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral2525g00002 Pral-Chr2525 1974 8567 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral2525g00002 601 817 Calmodulin-binding Proteins AT2G36910 29.004 6.52e-21 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral2525g00002 - - qsa:O6P43_010444 2381.67