LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral2521g00005	ATGGAAATGATGGGCCTGATTCTCTTATTAGTAGCCATAGCAGCAACAGCTGGTGAAGCTCAGTTGTCCCTGCATCCTGGCTGTCCCCACAAATGTGGAAGTGTGGATATTCCATATCCATTTGGTGTTGGACGTCACTGCTCTCTGAATGCATTCTTCAATCTCGCGTGTAATGGCACCACATTACATTACCCCGGCTCAAACATCCAGATCTTGAACATATCCATCGATGGTCAAATGGATATCTCTATGTATGTCTCCCGCATTTGTTACAATAAATCAGGAGCAGTGGATCTTGACCTCTCCTTTTCCTCTCTCAAGATTCCTGCTTTCCCTGTTTCTAGCTCCGCAAACAAGTTCGTGAGTGTGGGTTGTGACACCTACGGCTACTTGAATAGTTTTCAGGACGGACAGAATTATTCCACTGGCTGCCTATCGCGATGTAACCGACGACCACCACCAGCAGAGAATACTGGTGAACCTTGTTCCGGAATTGGGTGTTGCCAAGTCGATGTTCCTCATCGAATGAGGAATATCACTTTTGAATCATATAGCTTCCAAAATCATACAAATGTGTGGGCCTTCAACAACTGCAGCTATGCTTTTGTTGCCAAAAAAGGCTCCTTTGAGTTCTCTCCTAGTTATCTCGAGCGTCTCCCCTTTAACGAGTCCCGGCTCGTGTTAGATTGGTCTGTTGTAGATGATGATGCTCGTCAAGAAGCTACCGCTCCGAGCCCACCGAAATCTGTATGCAACCCCAACGCCATCTCCCAGAACTCCGCCACTGGATTCGGATACAGATGCCTCTGCAAGCCCGGGTATCATGGAAATCCTTACCATCCGGATGGATGTCAGGATGTCAACGAGTGTGACCAACCCAATGACTGTGACATCAAAGCGCATGCGCAGTGCAACAATTTCGATGGCGGCCACAACTGTTCTTGTCTCCCTGGTTATAAAGGCGATGGCCGCGTTGATGGAACCCGCTGCACTTTGGAAACTCCTTTTCACTCTAATCCTAATTTGCTCTCTCTTATAATAGCACTAGGCGTTTGTGCAACCTTGTTAGTTGGCTTCACCCTTGTTTCCATGTTATGCTGGGCACACAAGCAAAGAACTCAGAAGCTAATTAGAGAAAGAAATTTCGAGCGAAACGGAGGAAATGTGCTGTTACAAAGACTTTCACAACAACAAGGATATGCTGACAGAACCAAAATATATAACCAGGTTGAGCTTCAGAATGCCACAGACAACTTTGATGAAGATAGAATCCTTGGTCGTGGGGGACAGGGCACAGTTTACAAGGGTATATTACCAGACAACACGCCGGTTGCCATTAAGAAGTCTAGAGTAGGAGGGGATCCCAGACAAATTAAGGATTTTATCAATGAAGTGGTTGTTCTTTCCCAAATCAATCATCGGAATGTGGTCAAACTTTTGGGGTGTTGTCTTGAAACCGAAGTTCCTTTGTTAGTCTATGAGTTTGTGGATAATGGCACTCTTCTTGACCATATTAACCCATCAAAGAATGAATTCTTTATCTCATGGGAAACTCGATTAAGAATAGCTGCAGAAACTGCTGAGGCCATTTCATATTTACATTCTGCGGCCTCCATTCCAATTATTCATCGGGATATAAAATCTACCAACATATTACTAGACCACAATCATAGAGCAAAGGTGTCTGACTTTGGAGCTTCAAGACTTGTTCCTCTTGATGAGACTCAAGCTGCCACAGTGGTACAAGGGACGCTTGGATACCTGGATCCAGAGTATCTTCTCACAGGTCAGTTAAATGAGAAGAGTGATGTTTATAGTTTTGGGGTTGTGCTTGTAGAGCTACTTACTGGCAATAAAGCTGTTGAGTTCAATAGACCTGAACAACCAAATTTGGCTATGTCCTTTGTGTCTTCAATAAAAGAAGACCGTTTATGGGAAATTCTTGATAGGCAGTTGTTAGATCAGAAGAAGAATGCTGCACAGTTGAAGGAAGTTGCTTTTCTGGCAAGAAGGTGTATTAGAATTAATGGAGAGGAAAGACCAACTATGAAGGAAGTAGCAATGGAATTAGAGGGTTTGATTGCAATGGAAAGGCATCCTTGGATGAAGGGTAGGGATGCCATGGCTGAAGAAACTGAATACTTACTTGTTCATGTGCCTGATGAATATGGGGCCGCCGGTACTAGCAATTCATCTGGATATGATACCATGCAAAAGCAGATGGCGTTTGAGATTGAAGATGGGCGTTGA	2250	0.4422	MEMMGLILLLVAIAATAGEAQLSLHPGCPHKCGSVDIPYPFGVGRHCSLNAFFNLACNGTTLHYPGSNIQILNISIDGQMDISMYVSRICYNKSGAVDLDLSFSSLKIPAFPVSSSANKFVSVGCDTYGYLNSFQDGQNYSTGCLSRCNRRPPPAENTGEPCSGIGCCQVDVPHRMRNITFESYSFQNHTNVWAFNNCSYAFVAKKGSFEFSPSYLERLPFNESRLVLDWSVVDDDARQEATAPSPPKSVCNPNAISQNSATGFGYRCLCKPGYHGNPYHPDGCQDVNECDQPNDCDIKAHAQCNNFDGGHNCSCLPGYKGDGRVDGTRCTLETPFHSNPNLLSLIIALGVCATLLVGFTLVSMLCWAHKQRTQKLIRERNFERNGGNVLLQRLSQQQGYADRTKIYNQVELQNATDNFDEDRILGRGGQGTVYKGILPDNTPVAIKKSRVGGDPRQIKDFINEVVVLSQINHRNVVKLLGCCLETEVPLLVYEFVDNGTLLDHINPSKNEFFISWETRLRIAAETAEAISYLHSAASIPIIHRDIKSTNILLDHNHRAKVSDFGASRLVPLDETQAATVVQGTLGYLDPEYLLTGQLNEKSDVYSFGVVLVELLTGNKAVEFNRPEQPNLAMSFVSSIKEDRLWEILDRQLLDQKKNAAQLKEVAFLARRCIRINGEERPTMKEVAMELEGLIAMERHPWMKGRDAMAEETEYLLVHVPDEYGAAGTSNSSGYDTMQKQMAFEIEDGR	749

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral2521g00005	749	FunFam	Wall-associated receptor kinase 2	389	495	-	-
	Pral2521g00005	749	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21	20	693	IPR045274	GO:0007166
	Pral2521g00005	749	Gene3D	Transferase(Phosphotransferase) domain 1	496	711	-	-
	Pral2521g00005	749	ProSiteProfiles	Protein kinase domain profile.	419	702	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral2521g00005	749	SUPERFAMILY	Protein kinase-like (PK-like)	402	690	IPR011009	-
	Pral2521g00005	749	Gene3D	Phosphorylase Kinase; domain 1	387	495	-	-
	Pral2521g00005	749	CDD	STKc_IRAK	425	693	-	-
	Pral2521g00005	749	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	541	553	IPR008271	GO:0004672\|GO:0006468
	Pral2521g00005	749	SMART	egf_5	289	331	IPR000742	-
	Pral2521g00005	749	SMART	egf_5	246	285	IPR000742	-
	Pral2521g00005	749	SMART	egfca_6	286	331	IPR001881	GO:0005509
	Pral2521g00005	749	Gene3D	Laminin	240	326	-	-
	Pral2521g00005	749	SMART	serkin_6	419	702	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral2521g00005	749	CDD	EGF_CA	286	322	-	-
	Pral2521g00005	749	ProSiteProfiles	EGF-like domain profile.	286	331	IPR000742	-
	Pral2521g00005	749	Pfam	Wall-associated receptor kinase galacturonan-binding	28	80	IPR025287	GO:0030247
	Pral2521g00005	749	FunFam	Wall-associated receptor kinase 2	496	713	-	-
	Pral2521g00005	749	Pfam	Calcium-binding EGF domain	286	330	IPR001881	GO:0005509
	Pral2521g00005	749	Pfam	Protein kinase domain	420	686	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral2521g00005	Pral-Chr2521	19466	22886	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral2521g00005	8	749	Receptor kinase-like Gene Family	AT1G21230	44.782	0.0	564

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_WAK	Pral2521g00005		Pkinase	1.2e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral2521g00005	-		-	pcin:129293718	894.034