LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral2520g00008	ATGAAGCTTCCTTCATTTCACATTCTACTGCTCCTGTTTGTGCTTTCTCAATCCCTCCATTGTTGCTGCCAACCTGACCCGGTCACCGACGCACAATGCACTTTCAACGAGACAACAAAATTAGGATACAAGTGCAACGGCTTCCAAAATTCATGCACCTCCTACGTTGCTTACAGATCCAATCCTCGCTATAATACCGCTCTAACCATTGCCAATCTTCTTGACTCCCATGCATCATCCATAGCTTCCCTCAACAACCTATCAAGCAACACCAAGCACATTCCTTCTAATCAAATCGTTGTTGTTCCAATTGATTGTTCCTGTTTGGGTGGTATCTACCAGCATCCCGTTTCTTATGCGGTGCAGAAAGGTGACACCTACTATGAGTTGACCGTATTTTCTTATCAAAACCTCTCCATTTGCCAGATGATAGTCCGGCAAAATTACGGATTTGACGCCCTCAACCTCACTATTGGTGATGAAATTTCAGTTCCCGTCTTATGCGCTTGCCCCACCACTGACCAGATCGCAGATGGGGTTTACTCCCTGCTGGTTCTCCCGGTTAACCCTGGGGATTCACTCGAGTCAATCGCAGAGGACTATGGTACGAATCCACAGACTCTGATGACTGCTAACCAGTTGCATTCGAACACTACTATCAATATCTCCACAACTCTCTTAGTTCCCCGCAAACCCTCCTCTTGTAAACTCAATCCGCATTTATTCTACTGCACCTGCTCATTCTCCGAGGAATACGATCCAGATTCAAGTTCCAACACTCTCAATTGTGATCATATTCAACCTGATCCTGATCCTGATCGTTTCCCCGTCAAATTGGTTGCTTCCCTAGGTGTTGGCGTTGGTGTTGGCCTGCTAAGCTTATTTCTGTTGGGTCGCAAGTTATATCAATGCCTAAAACAAAAGCAAGAAAGAGCTCGCAAGGAAAAATTGTTCAAGCAAAATGGGGGCCTCCTACTGCAAGAAAAGATGTCATGTTACGAAAATGGAGACAAAGCAAGACTTTTTACGGCAGAAGAGTTGGAACGAGCAACAGATAACTACAACCGAAGTAGGTTTCTTGGTCAAGGTGGGTTTGGAACTGTTTATAAGGGAATGTTACCAGAAGGTACCATTGTTGCAGTCAAGAAGGCGAAAGAAATTGTGAGAAGCCAAATTGAGACTTTCATTAATGAAGTGGTGATTCTATCACAAATAAACCACAGAAACGTCGTCAAACTCTTGGGTTGGTGCCTAGAGACTGAAGCCCCATTATTAGTATATGAATTTATTGCCAATGGAACACTTTCTCACCACATCCATAACCAGGAACTTGAAGGAAAGCTTTCATGGGACATCCGCCTTAGAATTGCCTGTGAGGTTTCCGGGGCAGTGGCCTATATGCATTCTGCAGCTTCCATTCCTGTCTTTCATAGAGACATCAAGACTTCCAATATACTCTTGGATCACAAGTACAGTGCCAAAGTATCTGATTTTGGGACTTCAAGATCAGTCCCAAATGATAGGACTCACTTAACCACAATGGTACAAGGCACTTTTGGGTACCTTGATCCTGAATACTTCCAGTCCAGTCAATTCACAGATAAAAGTGATGTATACAGTTTTGGTGTTGTACTTATAGAGCTCATTACTGGAAGGAAACCGATTACCTTCTCTGAAGAAGATCAAGGTCAGAACCTTGTCTCAGAATTTATTGCTCTGATGAAGAAGGACCAAGTTTTTGAAATTTTAGATGCCAGAGTTGTTCATGAAGCAAGGAAAGATGATATTCTCAGTATTGTGAATCTCGCAAAGAGATGTGTGAAACTCAATGGGAAGAAGAGGCCCACAATGCGAGAGGTTTCAGCAGAACTAGAAGGACTGAGAAAGACACAAAACACTTTACAGATCACTCATTGTTCTCTTAAGTTTCCACTAGATAGAAAATCAGCTATGCATCCAACTCTTGATTCAGACCAAGAATCCACAGAAGAAAGCATGTCACTAATGTTCCAAATAGACTCCACACCCATCTGA	2034	0.4297	MKLPSFHILLLLFVLSQSLHCCCQPDPVTDAQCTFNETTKLGYKCNGFQNSCTSYVAYRSNPRYNTALTIANLLDSHASSIASLNNLSSNTKHIPSNQIVVVPIDCSCLGGIYQHPVSYAVQKGDTYYELTVFSYQNLSICQMIVRQNYGFDALNLTIGDEISVPVLCACPTTDQIADGVYSLLVLPVNPGDSLESIAEDYGTNPQTLMTANQLHSNTTINISTTLLVPRKPSSCKLNPHLFYCTCSFSEEYDPDSSSNTLNCDHIQPDPDPDRFPVKLVASLGVGVGVGLLSLFLLGRKLYQCLKQKQERARKEKLFKQNGGLLLQEKMSCYENGDKARLFTAEELERATDNYNRSRFLGQGGFGTVYKGMLPEGTIVAVKKAKEIVRSQIETFINEVVILSQINHRNVVKLLGWCLETEAPLLVYEFIANGTLSHHIHNQELEGKLSWDIRLRIACEVSGAVAYMHSAASIPVFHRDIKTSNILLDHKYSAKVSDFGTSRSVPNDRTHLTTMVQGTFGYLDPEYFQSSQFTDKSDVYSFGVVLIELITGRKPITFSEEDQGQNLVSEFIALMKKDQVFEILDARVVHEARKDDILSIVNLAKRCVKLNGKKRPTMREVSAELEGLRKTQNTLQITHCSLKFPLDRKSAMHPTLDSDQESTEESMSLMFQIDSTPI	677

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral2520g00008	677	SUPERFAMILY	Protein kinase-like (PK-like)	337	624	IPR011009	-
	Pral2520g00008	677	ProSiteProfiles	LysM domain profile.	184	228	IPR018392	-
	Pral2520g00008	677	ProSitePatterns	Protein kinases ATP-binding region signature.	360	383	IPR017441	GO:0005524
	Pral2520g00008	677	Pfam	Protein kinase domain	354	620	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral2520g00008	677	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	475	487	IPR008271	GO:0004672\|GO:0006468
	Pral2520g00008	677	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21	93	632	IPR045274	GO:0007166
	Pral2520g00008	677	Gene3D	LysM domain	184	237	IPR036779	-
	Pral2520g00008	677	ProSiteProfiles	Protein kinase domain profile.	354	627	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral2520g00008	677	FunFam	Wall-associated receptor kinase 2	325	429	-	-
	Pral2520g00008	677	SMART	serkin_6	354	627	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral2520g00008	677	FunFam	Wall-associated receptor kinase 2	430	642	-	-
	Pral2520g00008	677	Gene3D	Transferase(Phosphotransferase) domain 1	430	643	-	-
	Pral2520g00008	677	Pfam	LysM domain	188	229	IPR018392	-
	Pral2520g00008	677	Gene3D	Phosphorylase Kinase; domain 1	319	429	-	-
	Pral2520g00008	677	SUPERFAMILY	LysM domain	186	229	IPR036779	-
	Pral2520g00008	677	SMART	LysM_2	185	229	IPR018392	-
	Pral2520g00008	677	SMART	LysM_2	118	165	IPR018392	-
	Pral2520g00008	677	CDD	LysM	188	228	IPR018392	-
	Pral2520g00008	677	CDD	STKc_IRAK	360	627	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral2520g00008	Pral-Chr2520	54195	57966	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral2520g00008	284	631	Receptor kinase-like Gene Family	AT1G16130	54.571	7.40e-132	404

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_WAK	Pral2520g00008		Pkinase	5.6e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral2520g00008	-		-	gmx:100795455	742.265